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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0277700.1

TCTTCCTTTTAGCTCAGACATAAATCTTCCATGTTTTTGTGATTGGGATTTGGAACCGCTGGATGGTACAAATCCTCATACAAACTCTTATCACTGTCCATCCGTAGGCACAGGATCGTCCCTTTGCCTAACTTCCAGCACCCCCGGTACTTTGGACAATCTCCGGGCCTGGTTGTTCGTGAGGAACGCACTGAATGTCCCAGGGTAAGTCTCATACGTGACGCTCTGAGCTGCCTCGACGCTGCCGAGCACGGTGGCGAGCAACCGGTAGTTGTACTCGTCGGGATCTTCCACGCCGTCGTCGGCGACGCGCACCGTGGCCTCGAACAGGTGGACCTCCTGCCCTCTCCGGGTGGGCGGCGCCGCGGCGGCGGCGACGGCGAGTCCGGCGACGGAGAGAGCCAGGATGGCGAGGGCTGGCACCATTTGGCGTGTGGGTTTCTTCATGGTTGCAGGCTTTGCTGATTGCAC

Coding Potentia
Explanation CPC Score
noncoding -1.02704
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0277700.1 4 30021485 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0277700.1 4 OsAOX1a Resistance or Tolerance Cold tolerance R2737 R740
Osa04LNT0277700.1 4 pss4.1 Physiological trait Source activity RZ740 RZ590
Osa04LNT0277700.1 4 nan Morphological trait Panicle/flower RM303 RM348
Osa04LNT0277700.1 4 nan Morphological trait Panicle/flower RM303 RM255
Osa04LNT0277700.1 4 qPN-4b Resistance or Tolerance Drought tolerance RM317 RM255
Osa04LNT0277700.1 4 Xa2 Resistance or Tolerance Bacterial blight resistance RM317 RM349
Osa04LNT0277700.1 4 nan Morphological trait Root RM3288 RM5503
Osa04LNT0277700.1 4 rfw4a Resistance or Tolerance Drought tolerance RM349 RM1136
Osa04LNT0277700.1 4 gpp4 Morphological trait Seed RZ569 RZ565
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus