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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0278000.1

TCACTGCTTGCCCGCCCGGATGTCCTGCAGGAACATGAGGCCGACGGAGAAGACGGTGAAGAGCAGCGGCGTGGGCACCTTCTCCACGGCGGGCCCGACCCTCGGCACCTGCCTGCCGGCGCTCTTGGTCGTGACGGCGAGCAGCGGCGCCGCCATGATCGCCACCGCCGCCTTGTTCGCCAGGACGAGCCGCAGGTCCTTGCGGACCCACTCCATGATCAGCCTCCGGAACTCTTCCAGTGTTATCCCCTCGGGAGTTTCCTTCTTGTATTGCTCCATCTGCTTGGCGACAACATTCATGCATGGAGGATCCTTATGTGGACCAGCTAACTGCTTGTTAATCGAGTTGTAAACCATGAGGGTGGCAACATGGAGGGAGCTGATGTCCAGGAGCTGCGTGTTCTTGTCGGACAGCTCGGTGAACACCTTGTCGCAAATCCTCACCACATACAGCTTGCCTTGTGCTCTGTCCCACATACGGCAGAAGAACTGAGCCATCATCCTCCTCTCTTCGTCGGAGATGAACTCAAGAACTCGTAAAGTGGAGTCTACATCTAGGATGGCATATTTATGCGAGGAAATCTGTTTTTGGTTCTGGATAGATGCCCCAGAGTCGCTTGCAGGGAAGGCACTTCTTTCCTTGCCCCTACAGCAATCTCCCCACAGCCGGTTGTCGCAGACACCACGCGGGAGTCCGCCGCCGCCGCCGGCCGTCGCTGACG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.949455
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0278000.1 4 30366452 G A
Osa04LNT0278000.1 4 30366566 T C
Osa04LNT0278000.1 4 30367660 G A
Osa04LNT0278000.1 4 30367665 T C
Osa04LNT0278000.1 4 30367835 G C
Osa04LNT0278000.1 4 30367759 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0278000.1 osa-miR2867-3p Translation 5.0 21.345 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0278000.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0278000.1 4 OsAOX1a Resistance or Tolerance Cold tolerance R2737 R740
Osa04LNT0278000.1 4 pss4.1 Physiological trait Source activity RZ740 RZ590
Osa04LNT0278000.1 4 nan Morphological trait Panicle/flower RM303 RM348
Osa04LNT0278000.1 4 nan Morphological trait Root RM3288 RM5503
Osa04LNT0278000.1 4 nan Morphological trait Panicle/flower RM303 RM255
Osa04LNT0278000.1 4 qPN-4b Resistance or Tolerance Drought tolerance RM317 RM255
Osa04LNT0278000.1 4 Xa2 Resistance or Tolerance Bacterial blight resistance RM317 RM349
Osa04LNT0278000.1 4 rfw4a Resistance or Tolerance Drought tolerance RM349 RM1136
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus