© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0278500.1
GCTGTAATTATCGATCGCATTATGCCTTCATATAATTGTGAGTACGACAAAGGACCACCCCCAATGGAAGAATGCAAGTGCAGCAACACTGCAAAAGAATACTCAGACGGGCTGAGGCAACGCAACGCAACTCCCAGTTTGAAACTACAAATAATTCATGTCGCCAGCAATGAATCGCACTGCTCCACAATTCCGCGCTAGAAGATGCTCCCGTAATCCTTTCTTGGAAGAGATGAAGGTAGCCCAGTTGTGGTAAATGGATGCCCACTCGTTCCTCCCCAGGGCGTTCCATCGGCCATGGGCCATGCAGGTTGCCTGTTGTGGTGACTCCCTCTAGGATGATTATGAGTTGAAGTTGCCTGGTTGTATCGATGCTGAATATATGGTTGCCCATGCCGAATTTGGGGATTTTGTTGGGGATGATTTACAGGGTTATAGCCACCATAGTTAACAGGAACAGCAGAATGAGTATTCCCTCCAAGCGACCCACGAGAAGATGCGTGAAAAAAATGGTCTGCTCTGTAACTTTCGCCTGCTGGTAAAGGGTTCGAGCCCATGAAAATGTGGCTTTGGACATTTGCTGTTCTGGCGGATCCACTTGTTGGATTAGCTGAATCCCCGAGGTGAAGACTGCTGCTTAAATCAGCTGACAGTGAATTGTCTTCATGCAATAGTGACTCATCACTGCAAGGTAGAACAGCATAAACATTGATCTTCATACTACCTTTACAAGAAGCAATTGAATATGCATTTCCTCACCTAAAATAAGGGTCCCAATAAGCATTGTCAAGTGTGGATGCCGCTGATGAATCAGATAAATTATCAAGAGTTTGCAGACGAGGAGCAAAGTGTGAATGAAATGTTTGAGAAGGCCCATGACTAGAAGAAGCCTCCAAGGAAAAACTACCGGAACCAATTTGCGGTCTCCAACTAGAATAACCAGAACTTGGTATTGAATTCTGGGAGTAGACAGGATGTCCTCGAACATTGGCATCAGAATGACTAAAACCGACACCATCTCCATGACGTCCTTGTCCATGCTGAGATGGATATTCATGAGGTGGCATTGGCAAACCCCTCCTCTTGCTGTAACTGGATGGAGTTTTTCCTAATGGGGATCCATGAATGCCTCCACTTGCAGGTGAACCAGAACCATGCATCCCAGTGGAATTAGATGGGATTTGCATTTGGTAGTTAGGTGGGGTAAATTGTGATGGACTGGCACCAAGAGACATAGGCCCCGTACTCCCAGGGCTCAAGCGAATCCCTCTATCATGTGAGAAACGGGGTCGCAATCTTACGTCTGGACTAGACTCAATTTGTTTAAAACCAGGACCTAATGGTGAGTAATACATGTTGACAGCATTGCCATCACCAAAGCTTCCATAGCTGCTGGCATGACCAGCATTACCAACATAGCTACCATGGCTACCAAAGCTTCCATAACTACTCCCATAAGAATAAGGTATTTTTGGAGGATAGGGATTATTGGGTGGTAGAGACCTATTAACACTTCCAACCTGAGGAGATAGGCCTGCGGCTAGCCAGTGTCCTCCTCCAGGATTGTGTTCAACTGCGGCAGCACGACCAATTGGAATTTTGGGAGTCTCAGGTATGGGTTCATATGGACCAGTGAAAGGTTCGCCTGTTATAAATGGATGACATGAAGCCTGCAATGGCGACCATCGCTCATTGGGATCAAATTTCAGAAGCCCCTTTAGGAAATCAACCAGTATCACCCGCTCTGCCTTTTCTGTCTCTGTCAGTTCTGAATTTTTCCAAGGGTAACTGCATATGAGTTGGTCAAGCCTGAGTTGTGGGAAGTACCATTTCACTACCTTTGGCTTTTCAGACTCCCTCACTTCAATCTCCTCTTCAGTTAACAATCTGTAAGAACTGCCAATACCATCATGCACTTCGTTACCACGATAAATACTTCCAACATGTTTAAAAAACTTTGCTGAGTTCTTAGCTTCCCTTAGCATGTAATCTGGTGGTTGACCCCCAAGAATTTTTACCATGCGCTGGAGCACATCATATTCTGATGCTCCGGGAAATAAGGGAAGGCCTAAAAATAGTTCAGCAACTATGCAGCCAAATGACCACATGTCAATTGCAGTATTATAAGGATAGCCAAGGATAACTTCTGGAGATCTGTAATAGCGGCTCTGAATGTATGAGTATACTGTTTTACCCTCCAAGCATGCTGAACCAAAATCAATCACTTTCACGGCTGCATCTGTTGTAACACTCGGAGTTAACAGGATATTTTCAGGCTTCAGGTCACAGTGAATTATTCTAGCGCCTCTCATCACAACCATGGCATCCAATATCTGTTTTGAGAAGGCGCGAACAAATTTCATTTTCAGTCCTCTGAAGCTGTTCCTTTTCAAGAGCTCATACAGGTTTTGACCAAGCATTTCAAATGCTATACACAGGTGATTTTGGAATAGGAGATAGTCAAGCATACGGACAATGTTATACTGGTCATCAGGATCATGTGTTTGATTCAACGCTCTCAATAATGAAACCTCCACGAGCGCTTGATGGTAAAATGCAGGCTGGTTTTTAATAACCTTCACAGCAACATAATCATTGGTTTCAGTGTCCAAGCATTTGACAACCTGACCGAACGTTCCTTGGCCAAGCATTTCCTTGACTACGAACCTCCGATTTGATGTCCTGTTGACCAATTCCAAGTTGACATACAATATGAGGTCCCAATTCGCATTATCAAGTCCATCATTATGAGCTGGGGTTGAAGGATTCGTCAGAAAGATCTTTGGGTTTAGTGACTCTGAGTACTTAAACGCAGGGTTGCATCGTACAAATGTTTGAATGATGTCTGCCGTTAGTCTTGCAACAAACGGTTTCCTCTTGACGCCGTGAAGATTGCTTATACGGGTCGCAACCCCATTGCCCGAGGACGAGGGGGAGGGGAGGGACGCCTCCGGCGACCGCCCCGAATCCCCAGCACCAGCGAGACGTCGGAACACCGTGCCCACGCTAGGCTCCCACGGCGGCGCCGCCGCCGCCTTCTCCTCCATGTCCGCCAGCTATTCGGCAGCTCTTACAGTTGCTCGGGGAGATCTCCTACCGCCCGCCGACCACCACCCACCAGCAACTCCGAACCCAACCCCAGTCGCAACGATCACACCATCCGCGGGAGCAGCCGAGCAGCCGCCGGAGGAATCCAGCTCCATCCTATACGGCGGCGGCGGCGGCCATCCCCGACGCTCCGATCCCCCGGCTTAGCGCGACGGCGATGGTCAATCCGCGAGGGTGGAGAGGCAGCTAAATCCGCACTGGAGCACAGATTCCAGCCGATGGATGGCTGGACCAGATAGGGTTTATTGCCTACACGAACGAGAAAATTTGGGGATAAACACCAACACAGAGCGGTTTGGACTCCGATGCTCGGATTCCGAATTCCGCGGTGGCGCCACCGAAATTAGGGATTTGGGATGGGATTCGGGGGGGACGAAGGAGGCGACGCGGATCAAAATCCCAGCCCAATCCCCTCCCCGATTTCCTCGATTTCTCGCCGCCGTTTCCTCCTCCGTTTTTCCTCCGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0278500.1 | 4 | 30418106 | C | T |
| Osa04LNT0278500.1 | 4 | 30416573 | A | G |
| Osa04LNT0278500.1 | 4 | 30417918 | A | G |
| Osa04LNT0278500.1 | 4 | 30418785 | T | A |
| Osa04LNT0278500.1 | 4 | 30420590 | G | A |
| Osa04LNT0278500.1 | 4 | 30420667 | A | C |
| Osa04LNT0278500.1 | 4 | 30420818 | A | G |
| Osa04LNT0278500.1 | 4 | 30421257 | T | C |
| Osa04LNT0278500.1 | 4 | 30422275 | A | T |
| Osa04LNT0278500.1 | 4 | 30422574 | T | C |
| Osa04LNT0278500.1 | 4 | 30422879 | C | T |
| Osa04LNT0278500.1 | 4 | 30422921 | G | A |
| Osa04LNT0278500.1 | 4 | 30423961 | A | G |
| Osa04LNT0278500.1 | 4 | 30416883 | G | A |
| Osa04LNT0278500.1 | 4 | 30418842 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0278500.1 | osa-miR5823 | Cleavage | 4.0 | 20.278 | 1 | 24 |
| Osa04LNT0278500.1 | osa-miR5828 | Cleavage | 4.0 | 15.048 | 1 | 21 |
| Osa04LNT0278500.1 | osa-miR171c-5p | Cleavage | 4.5 | 19.124 | 1 | 21 |
| Osa04LNT0278500.1 | osa-miR426 | Cleavage | 4.5 | 13.283 | 1 | 21 |
| Osa04LNT0278500.1 | osa-miR426 | Translation | 5.0 | 18.23 | 1 | 21 |
| Osa04LNT0278500.1 | osa-miR528-3p | Translation | 5.0 | 14.172 | 1 | 21 |
| Osa04LNT0278500.1 | osa-miR815a | Cleavage | 5.0 | 15.011 | 1 | 21 |
| Osa04LNT0278500.1 | osa-miR815b | Cleavage | 5.0 | 15.011 | 1 | 21 |
| Osa04LNT0278500.1 | osa-miR815c | Cleavage | 5.0 | 15.011 | 1 | 21 |
| Osa04LNT0278500.1 | osa-miR1858a | Translation | 4.0 | 14.862 | 1 | 21 |
| Osa04LNT0278500.1 | osa-miR1858b | Translation | 4.0 | 14.862 | 1 | 21 |
| Osa04LNT0278500.1 | osa-miR2095-3p | Cleavage | 5.0 | 17.581 | 1 | 20 |
| Osa04LNT0278500.1 | osa-miR2097-5p | Translation | 3.5 | 8.439 | 1 | 22 |
| Osa04LNT0278500.1 | osa-miR1862f | Cleavage | 5.0 | 12.149 | 1 | 20 |
| Osa04LNT0278500.1 | osa-miR1862g | Cleavage | 5.0 | 12.149 | 1 | 20 |
| Osa04LNT0278500.1 | osa-miR5071 | Translation | 4.5 | 11.595 | 1 | 21 |
| Osa04LNT0278500.1 | osa-miR5145 | Translation | 4.0 | 21.185 | 1 | 24 |
| Osa04LNT0278500.1 | osa-miR5338 | Cleavage | 4.5 | 16.544 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0278500.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0278500.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0278500.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0278500.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM255 |
| Osa04LNT0278500.1 | 4 | qPN-4b | Resistance or Tolerance | Drought tolerance | RM317 | RM255 |
| Osa04LNT0278500.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0278500.1 | 4 | nan | Morphological trait | Root | RM3288 | RM5503 |
| Osa04LNT0278500.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0278500.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)