© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0278800.1
AGACAATAAATAGACCTTTTCTTAAAAAAATTTTGTAGCGGCACAAAAATGCGAGGCTCACAACAGAAACATTCATGAGCACTCTATATCAATAAAGGGAAAAGAAAAACACTACCAAAAGACCTACTTGCTACTGCAGAAAGAGCAGGGTGATCCTAGAGCAATAGCAGACCAAAATAGGTGAAGAGAAGAACTCGAGAATGGCACGGAAATTGCGTGCCCTCAAAAATGGGTGATGCCTTCAAGGCGAGGACAAGGGGCTGTTCCTCAGAGTTGAGCTAAAAGAGCTGGAGATCAGACTTTAGCCTGTTTTGCTTCCATTTTGGAAGGTTTTTGAATGATGCCCTTGTCATGCCAAACTTCTCTGTGAACTCAACTGATGATAAGTAGACCTCTCGCTTGGTAACATCAATGTCAGGAGCAGGATCATCAGATGTGGTGGTCAAACGTTCATATGGGTAGATTGTGCTGTTCTCATCATCTTCTGGCTCGTTTTCACTTTCACCGATCGTTGAGCCTTCCTCCTGTATTGCCTTCTCTGCCTCGGGGCTCGCTTTTACAGACTTAGGTATTGTACTTTTCGTAGGACCCTCGAAAGCACTGGTGAGAGCATTGATAGCTGATTGTTTGGATGATGTCTTTGGCAATTCAGACCCTCCGGATCTTGGGAAAAGCTTCTTGACAGCAGGGGGAGGGGTGGAAAGATACCGGGTACTTGGGTTCTCAAAGGCAGAAGCTATTGCGGTGAAAGCTGGAGATCTTCCTCGAATACGGTGACGTTCTGGGCTGTGGGACATACTTCTTGTGCGCTGCTGAGATTTATCTTGTCCTGCGTTCCTTCCTGAAAACGCTGGTGTTCGCCTTTTAGGTTTATCAAGCGATGGAGTTGCTCCACCCTTTACTATTGCAAGCTTCCTCTGGTATGAACTGCCATGCATCAGCGATTTTGCTGAGTCCCAAGTGAAGAACCTAGTAAAAAACTGTGGCTCACTTCCTTCTGTAACAATAAAAATTGGTGTGTCTTGCGAGAGATTTTCCATAAGGAAATCATGTAGAAGAAATTTCTCACCGATGTCCATCGCTTGTGATCTCAATTTGGCATCCACCTCCTGTCCAACCCAAACAAACAAGTCGGTGCGGCAGTCTAGAACGAAAATATCTTCTGCCATCAGGTCATCCTGAGTAAAGTGGTGTATTTCCTTGACCTTTAGATTTTCCTTGGATAAGATACATGAGAAAAGATGAGGGTCGCTTTCATTTTCTTTTCCTATTTTTTTGTTTGAATACTTGCATTTTCCACCTAAGAGTTCCCAGAATTGGTCGGTTTCTCTCCCCTCCTTTTGTGACCTGGATGGCAGATCTGGCTTAATTACATCTAGCTGTCTCTCAACCAAGTCATTATCCAGTGAGGTTGTAAGGTTCCCAGTCCATGTGAACACAGTGTTTCCATTGTGTAGAATGTAGCAGTAGGATGAATTTAATGACGAAGACACTGCATCAACTTGAATTGCTTGCATGTTTTCTGATCCTGAGCCTTGAATCCGGAAGAGAGCAAGCCCACCTTCAACGTAAGTGTCGTCATCGGTACCATTTACAGCAATAAAGTTCTTGTATCCAGAGCTAAGTCCACCCTTAAAAACTTGAAGACTCTGAAATATGACGAAAAATTGAATCGGTTCTTTCCCTTCATAGAGGCGAGCCTGGGCAGCCTGGAATTTTGCAGCCTGAAACATCTTGCTAGCTAGTGAAATTGCCGATGTTCTGTCCTCCTGAAAGTAATTAAGATCGCCCACATGCAGAAACTTGAATTTATCATACAGAAGTTAAACAGTTACCACATTACGCAAACCTCTCTGTTGTCCTATCAATCTAGAAAAAATCAGCTAACAGCATCAGACTGCTAACTTTATCCTTAGTCCTTGCTAATGACTTCACAACAAATATTTAATTAGTTCCTAGCACATATGTCCTATAAATCTATGTGTATGTTTATTTCAATTTTTTCATAACTAGAGTTAGTGCGTAGATATTACCTCAACACTCTTCTTCCCAAACCAAGTTCCAATAAGACATTCCTCCTTATCATCTCCAGTGTATGTGTATTGAAAAATGTAGCAATCTCCGGTGTAAAGTTTTGATTGATCAGAAGATGAAAGAAGAGTCTTGCCATCGCCATTTACTCGCCAGACCTGTAAATGACCAGTGCAATCAATATAAGGTTGGGGTTCTTCTTCTTCAGGAGCAGCCTTCATCAATCCTTTAACATCCAATCCTTGACTTCTGAGTAGAGCTGCCACTTTGCCTCGGCCATCCTCAGATGACAGCTTCAAATCAGGAGTAGGCGGCCACTTGTTAAATTTTGACTTGAACATGATTGTTTCGAATCCCTCAATCACTTTGATAACATTTGATCCTTTTCGGTTCTCATCAATGAGCAATTTCTCAGCAGCTTCACTTGCACCCTTTCTCACTTGCAAAGAAGTACCTCTGCCCATCCAAACATACATTTCAGCTCCACAGTCCAACAAGTAGCATTTGTTTGTCTCAAGTAACTCATGCTCCAAAGATTCAAAACTAATATGCTCCAGCGTTCCTTGGTTAAAACATAGCAATTTGGTCACAGTTTCCTTATCATCCCCATTGTCCTCTGAAGATGTCTTCTTTGGGAGAGGAGCAAAACCACCAAACAAACCCCAAAATTCACCAGCTTCAGTATCGGCCATCAACTTTCCATCCTCAACAGCTGCAACTTCGCACTTGCCCTCATGGAAAGTATCTTTGATATATTGCACAACTTCAAGAGCTTTTGCTCTCTCTTGAATGCATGAGTTAGAGCCATTGAACTGGAAAATTTTGTTCGCGGTATCCAAAATGAATATGTCCTCGTGATTAAGGGATGAACGAACAAAAGGAACCTCTTTAACATGAACAACATGCTTTCCTTGGCACACATATAAGCGGGTAACATGATCTTGCTGATTGACCTCTACATGATTGAACCCAGAAGCTACCCCTCCTGGCTGTGGCATGATGCATGGTCTAAAATAGGAGAGAAGCTTTTCAGTTTCACCGCCTTGTACTTCCCTGTACTGGACAGCACGCCCTCCAAGGGCAGCATCAAGCTCCACAGTTAGAATTGCAGCAGTTCCAGCTTCGTCCTGACTAGTATCCTTTCCAAGCCAGTAGTGGAGATCATGGCGAAATGAACCATTTTTCAAGGCTTCAAGATGATATATGAATCACCCATGTAAAATTTTCCGTGTGAAGATGTTGGCACGGGAACAGGCTTGAAGTTTTCAATACGCCATACCTCCAAACCATCCTTTTGTCCAACTCCACGGAAAGCCGGATCTACATCTTTCATAGAAATTGACATGCTTGATGTTGTGAAAGAGCCTTTCCTGATTTTGTCTCAAAACGACGCTAACATCATGCTGGAACTGAAGCCTGTGTGTTCTTGATGGCAATGAAATTTAGAAAATCCTTGTGGGGAGAGAAGCGACGACCCAGAGTCCGGAGAGAGGACAAGAGGGGAAAAGTAAAGGGCCATC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0278800.1 | 4 | 30463901 | T | A |
| Osa04LNT0278800.1 | 4 | 30464326 | A | C |
| Osa04LNT0278800.1 | 4 | 30464510 | A | G |
| Osa04LNT0278800.1 | 4 | 30465750 | A | G |
| Osa04LNT0278800.1 | 4 | 30465983 | A | G |
| Osa04LNT0278800.1 | 4 | 30466324 | T | C |
| Osa04LNT0278800.1 | 4 | 30466846 | T | C |
| Osa04LNT0278800.1 | 4 | 30464647 | A | G |
| Osa04LNT0278800.1 | 4 | 30464183 | C | T |
| Osa04LNT0278800.1 | 4 | 30466869 | G | A |
| Osa04LNT0278800.1 | 4 | 30466964 | A | T |
| Osa04LNT0278800.1 | 4 | 30467408 | G | A |
| Osa04LNT0278800.1 | 4 | 30467482 | A | G |
| Osa04LNT0278800.1 | 4 | 30468529 | C | T |
| Osa04LNT0278800.1 | 4 | 30468840 | A | G |
| Osa04LNT0278800.1 | 4 | 30468932 | C | T |
| Osa04LNT0278800.1 | 4 | 30469393 | G | A |
| Osa04LNT0278800.1 | 4 | 30469402 | T | C |
| Osa04LNT0278800.1 | 4 | 30469525 | T | C |
| Osa04LNT0278800.1 | 4 | 30469754 | G | A |
| Osa04LNT0278800.1 | 4 | 30470949 | T | C |
| Osa04LNT0278800.1 | 4 | 30470982 | A | G |
| Osa04LNT0278800.1 | 4 | 30471688 | C | T |
| Osa04LNT0278800.1 | 4 | 30472109 | G | A |
| Osa04LNT0278800.1 | 4 | 30472326 | A | T |
| Osa04LNT0278800.1 | 4 | 30472745 | G | A |
| Osa04LNT0278800.1 | 4 | 30472922 | A | T |
| Osa04LNT0278800.1 | 4 | 30467155 | C | T |
| Osa04LNT0278800.1 | 4 | 30466531 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa04LNT0278800.1 | DTM_#DNAt_MULE_japo_Os0067 | Chr4 | - | 30466399 | 30466552 | 153 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0278800.1 | osa-miR5079b | Cleavage | 4.5 | 23.607 | 1 | 22 |
| Osa04LNT0278800.1 | osa-miR156a | Translation | 4.0 | 12.171 | 1 | 20 |
| Osa04LNT0278800.1 | osa-miR156b-5p | Translation | 4.0 | 12.171 | 1 | 20 |
| Osa04LNT0278800.1 | osa-miR156c-5p | Translation | 4.0 | 12.171 | 1 | 20 |
| Osa04LNT0278800.1 | osa-miR156d | Translation | 4.0 | 12.171 | 1 | 20 |
| Osa04LNT0278800.1 | osa-miR156e | Translation | 4.0 | 12.171 | 1 | 20 |
| Osa04LNT0278800.1 | osa-miR156f-5p | Translation | 4.0 | 12.171 | 1 | 20 |
| Osa04LNT0278800.1 | osa-miR156g-5p | Translation | 4.0 | 12.171 | 1 | 20 |
| Osa04LNT0278800.1 | osa-miR156h-5p | Translation | 4.0 | 12.171 | 1 | 20 |
| Osa04LNT0278800.1 | osa-miR156i | Translation | 4.0 | 12.171 | 1 | 20 |
| Osa04LNT0278800.1 | osa-miR156j-5p | Translation | 4.0 | 12.171 | 1 | 20 |
| Osa04LNT0278800.1 | osa-miR156l-5p | Translation | 5.0 | 12.171 | 1 | 21 |
| Osa04LNT0278800.1 | osa-miR395w | Translation | 3.5 | 12.148 | 1 | 22 |
| Osa04LNT0278800.1 | osa-miR1429-3p | Cleavage | 4.0 | 16.063 | 1 | 21 |
| Osa04LNT0278800.1 | osa-miR2919 | Cleavage | 4.0 | 19.477 | 1 | 19 |
| Osa04LNT0278800.1 | osa-miR1862f | Cleavage | 4.0 | 5.639 | 1 | 20 |
| Osa04LNT0278800.1 | osa-miR1862g | Cleavage | 4.0 | 5.639 | 1 | 20 |
| Osa04LNT0278800.1 | osa-miR5079a | Cleavage | 4.5 | 23.607 | 1 | 22 |
| Osa04LNT0278800.1 | osa-miR5487 | Cleavage | 4.5 | 18.446 | 1 | 21 |
| Osa04LNT0278800.1 | osa-miR5506 | Translation | 4.5 | 24.488 | 1 | 21 |
| Osa04LNT0278800.1 | osa-miR5514 | Cleavage | 5.0 | 17.748 | 1 | 21 |
| Osa04LNT0278800.1 | osa-miR5076 | Cleavage | 2.0 | 19.68 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0278800.1 | 4 | nan | Morphological trait | Root | RM3288 | RM5503 |
| Osa04LNT0278800.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0278800.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0278800.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0278800.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0278800.1 | 4 | nan | Morphological trait | Root | RZ23 | RM255 |
| Osa04LNT0278800.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0278800.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM255 |
| Osa04LNT0278800.1 | 4 | qPN-4b | Resistance or Tolerance | Drought tolerance | RM317 | RM255 |
| Osa04LNT0278800.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)