© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0279000.1
GTCATTTTCGACCAAACTACTAGCGCCATTCTTGTCAGAATCTTCACGGACGTTCAGAGCTAAGAACAGGGACATTCACAAGCATTTGTCACAGCCTACAGGGCCGTGCAGATTAATGAAAGATGGGGAATATACAGCGTACAGGTTACCCGAAGTGGCAGCATTCAGTACTATTTGTCACCAATCCTTCAGAAGTGCACCGGCGACGTCCTTGTAACTGACCTTTTTCTTCTTTGGAGCACCAGCAGTTGGATCTGGGGCTGGAACCCCGGTACTCTGTGTGGAGCTTCCTGCGTGTGGTGCCGGAACACCAGAACTGGATGCAGAACTCGCTGAGGCCTGTGGCACTGGAGCCACGTAACTGGATGTGGAGCTTCCTACCCAAGGTGGATTCGTCTCAGCTTTGGCTTCGGCAACCCTGTTACCAACGTCCGTCTTCATCTGGCCAAGCGATGGAATCATGTCCAGGAGCATTGCGTGCAGCGGATCAACCATCTGTTCCATCTTCTCGCACGTTGCGCTACTCGTTGTTTCAGCGGTGTCTCTTCTAAGAACTGTTTGGTTGCGTTCGTGTTTTGGGCTGCTTGGTGTCTCCGTGGTACTCGATTTGATTCCTTTGGGCTCCTGCTCATCCAATGTGATAAGCTGGGCACCTGGAGGTGGTTCTTGATCCTTGTCATGGGCATGTTCTTCCATCTTAGAGATGGAATCTGCGTTCAACTTCTTATCATCTTGACCTGTTTCACCAGGACCTGTTTCACGATCTATCTTTGCAAGCCACTTTCCTCTTTGAGCCCTTGATCTTCGGACCACTCTAGGAGCGGTTGGATGTGCCCCCTGGTCTCTGTCACTGCTATCTTCTTCCATCTTAGAGATGTAATCTGCATCCAACCTTTGATCATCCTGTCCTGTTTCACCAGGATCACTTTCTTCAGATTGACCATAATCGATTTTGGCATGCTGTTTTCCTCTCCTAGCCCTTGTTCTTCGGACTGGTCTAGCAGAAACTTGGTCTTTGTCAAAGCTATCTACTTCCATTTTAGAGATGTTATCTGTGTCTGGTATTTGATCATCTAGACCTGTTTCACCATGGTCACTTTCTTCAGGCTCAACATCATCTATTTTTGCATGTTGATTTCCTCTTCTAGCTCTTGTTCTTCGGACTGGTCTAGGAGCAGGCTTTGCAGTTCTTGAGGCACTACTGGATGGCCTTCCCCTTTTCCTTGGTGCATGCTTAACATGAGATGTATCAGCCTTCTCATTTTCCTCAAGCTTGTCATTACAAGGCTGAACAGTTTCCTCACTTCGTTCAATTTCTATTTCTTCTAGTGTATCCGGTTTAAGGCTGTAAGTGGTTTCAGGCAGCCTTGTTTGTTTTTCCACTGAATCTTCCAACCACTTGTTACTGACAACCTGCAATCTTTTGTCATGTAGATAACGCCTCTCGGCAGGAGGGAGGCTCTTGTACAGCATGTCAAAATTGTAGGCTTGTAGAACTGAAACTATAATCAAATGAGTAGCGGGAGCAAGAATGCTGCACACTTGACCACCATGCATGGTAAGGTCCTGCTTCACTCTCTTGAGTGCAAGATCAGATATTACATTGTAGTCCGCATTCACCAAGGGTGCATGATAGAAGTAGACACAGCAACCCTGGAAGAAGCAGAATCTCTCATCTGCGCAATACTTCTTTTTGTAGTGGTGTACCATGTTTGAATCAACAACAGCTCTGTCCATATTGCTGAAAATCTGCTTGAGGTCAGAAATATCAATGTCCCAGTAGAAATAGTCGGCATATGAGTCGATCTCTTCAGGAAATTTGTGCCTTGCAAAATCTGCAAGAAAGAGGATATACTTAGGCTGCAAATGAAGAAGGCGTTTTTCCTTGCAACAGTCTAAGATCCAGGAATAATGAATGATCCTTCCCTGCCGTGTGGCTGCCTGATATTTGATACCTTTTTTCTCCGCTGCTATGCAATGAGTAACTGAGTCATTAAGATTCATCGAGAAAGATCCGCCATTCTCCACAACCAGTTTATGAAAATAGTCGAGATTATATGATGGAGGTATGTTGACAAAATAAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAGATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACCTTAACATTCTTCAGATCATTATCATCATCTGCCGCCCTGTGAGTTGTCCCATTACTTGAATGTACGATGTCCACAAATGCCTGAACATCAAGGCACTCGTGCCATGGCTTATCGTATCTCAACCGTTGAATGCGGGGGAACCTTAAGCTGTATGGGGCAGCAAATACCTCAGATTTGATTGTTCGAATATCGCTTGTTATGGATATTATGACTGACTTATCAGGGCTTTCTATCCAAACATCTGGCCTCTCCTTTGAATGGTTTGTCACTTCATAAAATCTTGGTGGTTTTTTGGGGTATTCATTTTTCCTGAAATGAGGCTTCAATTTGGTGACAAGAGCGTCAAGCTCTTCATCAGAAAGACCAGTACCGACTCGGCAAAAAGAAAGAAATCTTTTGGGATAACTATTGTCGTCAGAAGGCACTGCAAGACCAACTAAAAACTGGGCAACCTCTCCTCCTCGACGTCCTGAGCCATAATACCCACCTATAATAATAACATCAAGATCAGCACCAGCATGTATATAATCAGGCTTTAATTTAAGCCACTTTCCACTCCGGTCACCAGGTTCCCATTTGGACTCAAGGTCCTTTAGTATAATTCCCTCTTCTCTATTATCAACAGTGTCCTTGAAGAATTTCTCCACATCATCAAGACTATGTGCCAAAATGGACCAGCATGGTTCATCTGGCGGACGATGGATGTTCAGGCCACCTGTTGGAACTAATATTTCCAGATGGCCCTTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACATAGCACAACTGTCGATCAGTCTCCAGCCCCTCCTTTGCGGCCTTTGCTATTTCCTGGTTTGATCCAAATTCTGCAAACCGATTAAGCACAGTATCCCAAACAAGCATTTCTCCATCCAAAATACACCTGTCAACCAAGATATTTTCTATAATAACTTTGGACATTCCAGGTGCATATTCTGAGTGATCAAGAAAGCTCCTTGAGAAGAAATGAATCTCTTCCCCATTCTTGTGAATTTGAATACGGTCACCGTCAAATTTGCACTCAGCAACCACTTGTTTTCCGTGAAGCTTCTTCCAAGCAGATGAGGCATTATTGACTCTCATAGATAGCTGAGGCCTGACAGCCTTCCCCACTTCTATATCCTGGCGCTTATGCCTCTGACTTCGATCATTAAGCTTTTCACAGACCAATCTCAGGTCACAAGTGACATTGAACAAGTCTTCAGCATCAGGATGGAACTCATGAAATACGCTCTTCTCACTGATCCCCAATTTCAAATCTTTCAGAATAATCATCAAGAGCCACTTCATTTCAAGGGCATTGGTTTTCTTGATCAGACTAGAAAGAATCGAAGCCTTCTCAGACCTATTCTCAGTTGCAGCCAGGCGATCAAGTGCGTCATTCACCTCTTTTATTGTCAATCCCCCAGAAGTCATTCCTTGTCTCCGCTGTAGCACCTCAGCGGCGACGAGTGCGAAGTTGCCGGCGTTGCGGAAGCCGCCCCCGCGCCGCCAGTTGGTGAGCCGCACGGCGTCGGGCGAGTCCTTGGCTATCCCGAGGGCGTCGACGAGGACGGAGGCGAGCGCGGCCTCCTTGAGCCCGTACGAGCCGCGCTCGCGGTCGAGCCCCGGGAGCACGAGGCGGAGCGCGCTGAAGTAGTCGTCCCTGCCGCCGGGCCCGTAGGCGCGGTCGAGGAGCGCGCGGAGCCGCGCCCGCTTCTTCGCCGCCGTGCGGTCCCGCGACATGGCCTGGAACATCGCCACCAGCAGCCCGAACCGCACCGTCGCCGCCATCGCCGCCGGCGACGAACCGCCGAGGTGGCCAGAAGAGGGGGAAA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0279000.1 | 4 | 30629804 | A | G |
| Osa04LNT0279000.1 | 4 | 30631331 | T | C |
| Osa04LNT0279000.1 | 4 | 30633486 | G | A |
| Osa04LNT0279000.1 | 4 | 30633662 | A | G |
| Osa04LNT0279000.1 | 4 | 30633983 | A | G |
| Osa04LNT0279000.1 | 4 | 30635938 | T | C |
| Osa04LNT0279000.1 | 4 | 30636474 | T | C |
| Osa04LNT0279000.1 | 4 | 30636514 | T | C |
| Osa04LNT0279000.1 | 4 | 30636644 | T | A |
| Osa04LNT0279000.1 | 4 | 30638066 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0279000.1 | osa-miR5535 | Translation | 5.0 | 24.848 | 1 | 22 |
| Osa04LNT0279000.1 | osa-miR5539a | Translation | 3.5 | 17.862 | 1 | 22 |
| Osa04LNT0279000.1 | osa-miR812q | Translation | 5.0 | 24.428 | 1 | 24 |
| Osa04LNT0279000.1 | osa-miR5814 | Translation | 4.0 | 18.518 | 1 | 24 |
| Osa04LNT0279000.1 | osa-miR5820 | Translation | 4.5 | 10.209 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR2873c | Cleavage | 5.0 | 15.002 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR5539b | Translation | 3.5 | 17.862 | 1 | 22 |
| Osa04LNT0279000.1 | osa-miR160c-3p | Translation | 5.0 | 21.827 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR393a | Cleavage | 3.0 | 17.663 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR397b | Cleavage | 4.5 | 18.438 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR168a-5p | Translation | 4.5 | 17.191 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR172c | Cleavage | 4.0 | 18.502 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR393b-5p | Cleavage | 3.0 | 17.663 | 1 | 22 |
| Osa04LNT0279000.1 | osa-miR1423-5p | Cleavage | 5.0 | 10.329 | 1 | 24 |
| Osa04LNT0279000.1 | osa-miR1429-3p | Translation | 5.0 | 18.068 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR1854-3p | Cleavage | 4.5 | 17.243 | 1 | 22 |
| Osa04LNT0279000.1 | osa-miR1862a | Cleavage | 4.5 | 20.348 | 1 | 24 |
| Osa04LNT0279000.1 | osa-miR1862b | Cleavage | 4.5 | 20.348 | 1 | 24 |
| Osa04LNT0279000.1 | osa-miR1862c | Cleavage | 4.5 | 20.348 | 1 | 24 |
| Osa04LNT0279000.1 | osa-miR1868 | Cleavage | 4.5 | 17.956 | 1 | 24 |
| Osa04LNT0279000.1 | osa-miR812f | Cleavage | 5.0 | 17.793 | 1 | 24 |
| Osa04LNT0279000.1 | osa-miR1862d | Translation | 4.5 | 20.348 | 1 | 24 |
| Osa04LNT0279000.1 | osa-miR1882e-3p | Cleavage | 5.0 | 22.982 | 1 | 24 |
| Osa04LNT0279000.1 | osa-miR396f-5p | Cleavage | 4.5 | 21.511 | 1 | 22 |
| Osa04LNT0279000.1 | osa-miR2905 | Translation | 4.5 | 21.636 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR2875 | Translation | 5.0 | 18.946 | 1 | 24 |
| Osa04LNT0279000.1 | osa-miR2919 | Cleavage | 3.0 | 16.043 | 1 | 19 |
| Osa04LNT0279000.1 | osa-miR1862f | Cleavage | 5.0 | 20.348 | 1 | 20 |
| Osa04LNT0279000.1 | osa-miR1862g | Cleavage | 5.0 | 20.348 | 1 | 20 |
| Osa04LNT0279000.1 | osa-miR812o-5p | Cleavage | 5.0 | 22.921 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR812o-3p | Cleavage | 5.0 | 19.943 | 1 | 24 |
| Osa04LNT0279000.1 | osa-miR5497 | Cleavage | 4.5 | 17.131 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR5508 | Cleavage | 3.5 | 19.316 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR5511 | Translation | 5.0 | 19.588 | 1 | 21 |
| Osa04LNT0279000.1 | osa-miR5524 | Cleavage | 5.0 | 22.014 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0279000.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM255 |
| Osa04LNT0279000.1 | 4 | qPN-4b | Resistance or Tolerance | Drought tolerance | RM317 | RM255 |
| Osa04LNT0279000.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0279000.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0279000.1 | 4 | nan | Morphological trait | Root | RM3288 | RM5503 |
| Osa04LNT0279000.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0279000.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0279000.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0279000.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0279000.1 | 4 | nan | Morphological trait | Root | RZ23 | RM255 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)