© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0279500.1
GCCAAAACCAAGCAACAATGTATGTACACAACGGCAACAACCTGCACGCCCCGTTCGATTGATAAAACAGTTTATGCTGGTGTATGTATGCACAGACGAATCACCACCGCCCACCACCACCCTGCACACACTCACTACTCGCTACTGAACCCACAAGTTTGAACATCTCCAGTTTTGTCCTTGCTAACATATCTCATCTCTAGGGTCTGTTCACAACAGCTACATACTATAGGTAAACCATCTTTTTTCAGCACCACCACACAAATTCAATCGGAACGAAGAGAAACGCAGAGACAATGTTGCGAAGCGGGTGTTCAGCAGCGGAATCGGATGACGATGCAGGAGATGTCGTCCTTGCTCTTCCTCGCAAGCGCTTCGGTCGTCAGTCGCTTCGCTGCTGCCTGGGGGTCCTTGATCGACTTCACAAGATCGACGGCTTCCTGGTTCTTCATTACCTTCCATAGTCCATCGCTGGCAAGTATGACGAACTCTATGCTTGAATTTATTGGTACATGCCTAACATCAGGTTCTGAACTCAAGTGCGCCTTGAGGCTTTGGTCCCCAAAGGCCCTCGCAACAGCAAGCTGACCATTTACCCGGGGAACATCACCAGGAAATGTTGTTACAAAGCCACCCTGCTTCTCAATCCTCTGCCTTTCATTAGTTGTATGAGGTTCATGGTCAACAGTGAGCTGATTAGCAGCACCTCTTTCACACACAACAGCTCTTGAATCACCTACATTTGCTACCCACATATCCTTTCCATCAACGACAATAGCAGTAACTGCTGTTGAACCACCAGGTCCAAGTTGTTTGGCATTCTCCAAAATATATTTGTTTGTAGAGCGGTATGCATTCTTAATTGCTTCCTGAGGGTTAGTCCAGAAGATAGGCTCTTTCAGTATGTTGCAGAAAAGGTTAGCTTTCAAGTAACTTGGAACACTGTCTCCCAAGTGACCATCAAAAATGGCAAAGAGACCAAGCTCATGGCTCTTGTCATACTTGTACTCTGCCACATGGTAGTCCTCCATGTCATGCCCAGATTTCCCTTCCACCAAGTGGAATCCATGAGTCACTTTGTTGCTTGACTGCTTACTCCTCCCCTTGCCGGTATCGGTAGATGACGAATTAAGGCATGTTGCACTCTTTAAGACCATACACAAATCAGGCAAACCAAATTAATGTCAGTACACACTGATGATAACCCAAACAAGACCAATGAAGAAAGGAGGTGTGAGGATTCCATGAAAATGGCACCAAAATCAGCATGCACAAGTTCTCAAAAACTTAAAGAAAAAAATAGTTCACTGTACAAACAAGGTTGAAGGTTGTAATCGTATCAAATAGCAGCATTCACAGTATTGTTCGTGTTAATGAATAAGAACAGAAAAAACTAGTCTTGTGGAACACCATTTTCCTTGGCTTTGAACTTTCATTTGAAATTGTGGGCAAATCAGAGTTTTTTTGGTAAACAAGTTATGACCTTGATAAATCAGCAATGTCTAGTTGTCTCTATGTATGACAAATAACATTTTTGCCGCTGATAGACAAATGTAAGAAATCTCAAACCATGATTTAAAAAAGGAGAATAATCCATCCCTGAAAATAATAGTAATAGACTATTCATAGGAACAGGAAAGTTCCATTTTCATCAATGAAGACTGCGGATTGTGATTGCTGAGAATAGTAATATAACATTTTCACCATTTTTGTAGTTCTAAAACATAGAATGTATTTTGTCAGAAAATGTTTTGCACAAATTGACAGAAATAGTCAATAGCATATTTTTTTTTAGATAAAAGCACATGGTCCAGTACTAGCCTTCCTATTGCCAAACTATTCGGAGAACATCACTATCTGTAAAGTGGTATAATGTATGCAAGGAGCAGCTATATTATTCCGAAACAATATTCTGCAAAACATTTATTAGATGAACAACAGGACATTTTCTAAGGTCCAAGTGGGGGGCCACGGCATAGAACTGAAAAACAAACAAGAATAAAATCACAATTTGCAGGTAATATTAGACTTCATAGGCGATAGACGAGTAGTATTCATCCTTTTTTGTTTCCAAAGGTGATGTAATCTCCTAACTTAGTAGACAACGCACATGATCAAATCCTGAGGATCATGCCGATAATCCCCCAACCTCTGCTCGATATCTGCAATAGGGATACTTCAAGAGCTACTTTACGGGTGGTCCAGGTCTGAACTCATAACACTCGTAAGCATGTGAAAACAGGTGTCTAGCACCGCAAGTTACTGACTCTTGCACGTCATTAACCACAGTGTAATCAAATCCTGAGAAACCAATTATCAACTACACACACCAAGAGGCAACTTTCCCAAGGCAGGCAAGAACAGATGACAGTTTTCTTTCTTGTTTGGGTTCATAAACAGACAGAAACACATAACATTAAAATATAAAAACAAGGGCACTAATATCATAATCTGATTGCTTGAAGACAACTACCGCCATCATTCCGATAACCACAGATAAGGCTAATGATTTGCATGAACTGGTCTGGTTTGGTACAGCAAGGTTACAAGCTTAAGTAGGGAGCAATGCTATACGTACTAAATTTTTCTTACTAAACTTTTACTAACAATCATCTCAATCGTTTGATTTAAGTAGATGGAAGTTACAAAAAAATCTAGATGCACTCATAGCATAACAGTGTTAGTAAAAATTTAGTAAAAAAAAGTTACTAGGTATATCCTTTTCCTTAAGTAGGTGCACAGCAAGGCTCCAAGAAAGTACAAGTTGCTTACGGCTGGCACGGCAGCATGGGCGCACGCGTACTAAGTCAAAAAGGAGGAAGCGGAGGGTTGCACAAGTCCGACTTTGCTTGGAAGTTGCAACCCCATACTTGGAGATCCTGTGACTCCAAGTTAACAACTTGCACTATGTTTAGCTTTTAATTAACCTCCTCCGGTAAAAACAAAATACTATGATTTTTCCCCTAAAGGTAATGATTATTTTTTTTCCTAATGGTAATTAATTATTACTACCTATTGTGACCTCGAGCGCTCAACTGAGTGGATGTTTCGATAAACACGGATATTAATCAGATGCTAAAAAAACGAAGCTCCTTTCAATCAGGCAGGCACCAGCACATCAAAGAGGGTAAACGAAGTTAAAAAAAATCAAAAATTTTGCTACGCAGCCAAGAATTGAACCGCATGAAGACAACTCAAAATAGTCAAATTAAAGAAAAAAAAAGGTAGGAAAAAAAAGAAGAGGCGCACGCAGGCAGGCAGGGAAACATACCCGGATCATGTTGAGTATGTCGGGCCGCTTCTTGCCCCCGCAGGCCGAAGACGAGGAGGAGGTGCCGGCGGCGGAGGAGGAGGGGGAGCATGACGCCGACGACGACGCCGACTGCCGCTCCATCCGCCCGACCATGTCCTGTCCAATCACCACGGACACAGACCAGCTCGCTCGCTCGCTCCCCACTCCCGACGACGACGACGACACAGCAGCAGCAGCGCACGGGGATGAGAGATCTTCTGGGGGGAGGAATTTCTATCCCTTGGTTTGCTTCTCCTGATCCGATTCTTCCACCACCAGCCGAGCCCGAGGCCTCTCGCGGCGCGGACACCTGTGGCGGTAGCGTGAGGAGAAATGGAATGGAATGGAGGAGAAGAAGAAGAGAAAAAAGAAGTT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0279500.1 | 4 | 30875895 | A | T |
| Osa04LNT0279500.1 | 4 | 30876584 | G | A |
| Osa04LNT0279500.1 | 4 | 30877646 | G | A |
| Osa04LNT0279500.1 | 4 | 30877722 | G | A |
| Osa04LNT0279500.1 | 4 | 30878511 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0279500.1 | osa-miR5821 | Cleavage | 5.0 | 16.291 | 1 | 21 |
| Osa04LNT0279500.1 | osa-miR6254 | Cleavage | 4.0 | 12.61 | 1 | 21 |
| Osa04LNT0279500.1 | osa-miR159f | Translation | 5.0 | 24.09 | 1 | 21 |
| Osa04LNT0279500.1 | osa-miR1423-5p | Translation | 5.0 | 15.036 | 1 | 24 |
| Osa04LNT0279500.1 | osa-miR2055 | Cleavage | 4.5 | 15.623 | 1 | 21 |
| Osa04LNT0279500.1 | osa-miR2055 | Translation | 4.5 | 17.437 | 1 | 21 |
| Osa04LNT0279500.1 | osa-miR2864.1 | Cleavage | 4.5 | 6.757 | 1 | 21 |
| Osa04LNT0279500.1 | osa-miR2864.1 | Translation | 4.5 | 18.381 | 1 | 21 |
| Osa04LNT0279500.1 | osa-miR2864.1 | Translation | 5.0 | 6.683 | 1 | 21 |
| Osa04LNT0279500.1 | osa-miR2922 | Translation | 5.0 | 13.234 | 1 | 20 |
| Osa04LNT0279500.1 | osa-miR1862f | Cleavage | 4.0 | 13.217 | 1 | 20 |
| Osa04LNT0279500.1 | osa-miR1862f | Cleavage | 5.0 | 20.947 | 1 | 20 |
| Osa04LNT0279500.1 | osa-miR1862g | Cleavage | 4.0 | 13.217 | 1 | 20 |
| Osa04LNT0279500.1 | osa-miR1862g | Cleavage | 5.0 | 20.947 | 1 | 20 |
| Osa04LNT0279500.1 | osa-miR5072 | Translation | 4.5 | 24.503 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0279500.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0279500.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0279500.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0279500.1 | 4 | nan | Morphological trait | Root | RZ23 | RM255 |
| Osa04LNT0279500.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0279500.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM255 |
| Osa04LNT0279500.1 | 4 | qPN-4b | Resistance or Tolerance | Drought tolerance | RM317 | RM255 |
| Osa04LNT0279500.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0279500.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)