© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0279900.1
CTAGTACTGGATTAGACATTTTATAGCATTACGAATCCGGATAGAGATATTTACCAGATTCATCGTGGTATGAAATGTCTAATCCGGTATTAGGTTTCTAATTTTGGAACAAAGAGAGTAATAAACAAAACGTGAAGAGATGAAGCTATTCTGGCCATCTGGGTCAAGAGCCAAGAGATGAGTTTCACTATCGATCGGAGTCAGCGTAGCAGCGGGAAATACCACTGCTGGCAGTGCATTTCAGCATCTCTCCAAAAGACCAGGGACAGGGAAACAGCATTAGACGCAGGTTTATATATTACATGGCCAAAATTCTACGCGGCGAGGCAGATCAATCGCTTGTAGACACCACTTCCTCCTCCTCAACCTCATAATCTTCGTCATCGTCGTCGTCATCGTCGTCGTGGTGTCTCGCAGATTGACGCCTTTCAACATGCTGTTTGTCTGATTCGTCCTGATGTTTTGACTGGTCCTGTTGAACATCTCCTCCAGCTGCCGAAGACCCAGGGGCATGCTCATGATCAACACCTAACAATGGCGCACCACGCACACTTTGCTCCAGGGATTTAAACTTCTCCTCCCAGGATTGATTTAAACCTTGCAGAGCATGATTGATCATCTGTTGGACCTCCTCCTGCGAGAACTTCTGCTGACCCCTTTTACCAGGGATGGACTTTGCTATCTCCGCGATTTTGGCCTTGTCGATGGTGCCAGTGAGTCCATAGTACCTCCCACGGTTCCGGCCCCCCACCTGCTGTATCCATGCAGCATCGGGATCTGCAGGTTTATCACCAGCCTCCTCCATTCGCTTCTTGAAACCCTCCACAATCCGTTTCGCTTTCTCACTGACAAATTCTCCTGTGCCACCATTAAACTTATGGGTCTTGTTGAATATCTCAAGTTCTGACACTGGCTTCCCACCATTCTCTATGACCATAAGCTGCCGTTGCATGGCAAAGCTCCGAGAACCTGATGTGTGATGAGCACGACCTCCAACAAACCGATTCTTCCTATACTTCAGAGACATCTGCAAGACTTCTTCTTTGGCCCAATATTCACACAATCTCTCCCACCAATTCGGATGCATCCATGCAGGGGGGAAGGGTTTCCACAGTAAAGGGTCCTCGTCCTCATTTACCTTTTCTGTCTGATTGTCCTTTGGCTCTTCTGTAGCATCTTCCTCCTCTGACTCTGCATGACTATTGGAGCTACGAGAACCTGAAGCTTTTTTGGCTTTTTGTACTGCAGCCAATTCTGCTCTAACCCTTCGCTTCTCTTCGCACAGGAGGCCAGTAAACTGTTTTACTGCTCTGCGCTGAAATATCTTCAGGCACTCGGCCTCACGGCCAGGGGCCCACTTGTACCTTTGAAGAAATTCATTCAAAATAGCAGCCCTCGTCTCTGCAGGATAATGTTTCCAGCGGTAAACCAATTCCTCATTAGCTGGAACATCACCATGCTCACCAACCGGCAAATAGGTTGATCCAGGGTACTTCTGCTTCAAAAGAGCAGTGATGGTAGAGGACACCTTGGGACAAAGTGGGTTGACATCCCAGTTATCGATATTATTTGGTGTCAAGACAGGCCTGTCATATTCCCTGCGTGGTTCAATCAGTCCTCTAGGACGGCGTCCCCTGCCCCTACCTGATGATTTACGACTATATTTTCTTAATACGGGATGATAGCTATATGCGTCCTGTTGCGCATGCGTAACCTGCTCTGGTGACTGTGGCTGCACCTGCTCACCACTTTTATCAAGCTGGTGTGTACCCCTGACCTCTGGAGGGCACAGTTGATTGTAGCGGTGCGGGGATTGCTCGGCTTGAGGCATCTCACGATTTGAAGATGCTGGTAAAACAGATGCATCAGCATTGCCTGACTCACTTGAGCATGCTTGAGGCATTTGGCACTGAGGTGATGGACTGGGACACAAATTGGCAATGAGTCGGTCAATGTCTGGAGGATCAGAATTATATTGGTTTGGAGAAGCAGCTGGCTGCTGGACTGGATCATCATTTATTGGTTGTTCTGGTTGTTTCGTCAAGCGCTTGCTACGCCTAAGATAGAGTCCTTCATTTGGAGAACTCGGAAAGCCCTTATTTTTCCTCTTATTCTCACCAGCATTCTTGCTGCTCCTTTTTCTCTTCGGGCATCCAATCGTCTTACCAGCTTGTGCTTTTTTCAGTTCACTAGCTTGATTGAGGGGCTCTGCTTTTTCCCGCTCCATAGTACTTGAGACATTTTTTGCCCGCTGTTCACGACTTGAAATGTCAACAAGAGGTTGCTGCCCTTGTGCGTGGTCCCCACGAACTGAATTACTCGGAGGGCAAGCTTGTGCCTGTGGTGTGCTTTCCTGAATAGGACGCTCTGGTTGTAGTTTTTCAATATATATAGATTCAACACCTGCCTGCAATCTAGCCTTCCTTGAACTAGACCTTGCAGTGGTTTTATCAAGTGTCTCATTGCATGATTCCCCCCTATGAATTGAATGGTTAACAGGCTCCTTTCGTGCCAATGTGTGTTGGACTGCTGCTGGGGAGTCGTTTCTGAAAGAACTGAATGTCTCCTCTCTTGGAACTGAACGAATGGAGCATTGTGCTGGTATCTGCTCTGAACGAATTGGATGGTGTCTTTCTATTTGTGACTGCTCCGGCCGATGGCGCAGGGAAGACGCCGTGAGCGTGACGCCAGCTGGGGGCGGCGCCACGACGGAGACCGTGGGGGCGGCAGGGGAAGCGAAGTAGAGGCGGAGGCGCCCGCCGTCGACGACGAGCTCGGCGGCGCAGACCGGGCAGGCGAAGCGCACGAGCCCCGCCGGCACACTCAGCAGAGCGCAGCAGCCACCGCACGGCATGCGCGCGGGCGCGGGAACCTGCACGGGGACCGGCACGGGAGCGTGCAACACCGCGGCGGGAGGAGGCCCCCGTCCGGGGATGGGCAGAGCCCGCCGCGGGCGCGGCGGCGGCGGAGGCATGAGCTCGGGCGGGAGCGCCTGGTGGGTCCCGCAGTCCGGGCAGGCGAACTCGGTGAGGCCCGGCTCCACCTCCAGCGTCTCCCCGCACCCCGCGCACCGCACCTCCACGAACTCCGGCTGGCCCCCCGCCGCCTCCGCCATGGCTTCGGGGAGCAGCGGCTAGGGTTTCCTTCGGTGCGCCCTCGGGGAACAGAGTAGTAGTTGGAGTGAGGTGTGAGTGCGAGATACTAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0279900.1 | 4 | 30920439 | A | G |
| Osa04LNT0279900.1 | 4 | 30920465 | A | T |
| Osa04LNT0279900.1 | 4 | 30920978 | G | A |
| Osa04LNT0279900.1 | 4 | 30921380 | A | G |
| Osa04LNT0279900.1 | 4 | 30922993 | T | C |
| Osa04LNT0279900.1 | 4 | 30923494 | A | G |
| Osa04LNT0279900.1 | 4 | 30923698 | A | G |
| Osa04LNT0279900.1 | 4 | 30924772 | A | T |
| Osa04LNT0279900.1 | 4 | 30924934 | T | C |
| Osa04LNT0279900.1 | 4 | 30924508 | T | A |
| Osa04LNT0279900.1 | 4 | 30925170 | T | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0279900.1 | osa-miR5534a | Cleavage | 4.5 | 15.804 | 1 | 21 |
| Osa04LNT0279900.1 | osa-miR396c-3p | Cleavage | 4.5 | 21.278 | 1 | 21 |
| Osa04LNT0279900.1 | osa-miR169i-5p.2 | Translation | 4.0 | 19.209 | 1 | 22 |
| Osa04LNT0279900.1 | osa-miR1428a-3p | Translation | 4.5 | 13.886 | 1 | 21 |
| Osa04LNT0279900.1 | osa-miR5072 | Cleavage | 4.0 | 23.317 | 1 | 22 |
| Osa04LNT0279900.1 | osa-miR5507 | Cleavage | 5.0 | 20.702 | 1 | 21 |
| Osa04LNT0279900.1 | osa-miR5517 | Cleavage | 5.0 | 20.722 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0279900.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0279900.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0279900.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0279900.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0279900.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0279900.1 | 4 | nan | Morphological trait | Root | RZ23 | RM255 |
| Osa04LNT0279900.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM255 |
| Osa04LNT0279900.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0279900.1 | 4 | qPN-4b | Resistance or Tolerance | Drought tolerance | RM317 | RM255 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)