© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0280100.1
ATCAAAATTTTTACTCAAAAACTCAAAACGAGTACCTTGTCTAGTACATGGCAAAAGAATCTCTTCCTCACACAGGAATACACATGTTAGCTCACCACACTCTGATGTGTTTGCTACACAACATTTGCTTGCAGATACATTTCGCAATTGTACAAAAATTACAGGAGACGTGGATTCCTAAAACAGATGTTATCCCTTCCTGAATAATGCTAGAGGTGCAACTATACTCTTCTTCTCTTTGCAATGCCATTCTTCTCTAGTTAGTGTTATCTCTACTTGATAGCAACGAACAAAACAAAAGGGTGTCGGAAAGGGTACCATTCGGCAATCAAACATAAGAGGTCAAGCGCACCTGCATCACATTTGTGTGTGGAATGCTCATCGACATCATCGCCCTGCGGCAGTTGTTCCTCAAGAATGCGAAGAAGTAGTTTATGATCAGCTTCTTGAAGAACCAGGAATTCTTCCTGGCTTTGACGATGGGGTTGTCAATGAGATAGACGGCTCCAGATTGCTTGGCCTGCCTGATGAATGCGAGCTCCAGCTCAAGGTTCTGTGTGTAATCCACCACAGGATCGTGCTGAGGCGTTGAGCAACTGGCCTCAGGAATAACTTCTGCCGAAGGCACAAAGTCTGCCAGGAGAGGGACGTCAAGCGAGTAGAGGCTACCATTTGGCGCTACGATTGTCCTAGATGGGGTTGGAGGCTCCTCGTCAGAGTCGATGTCGTCTCCACTTTGTAGGGATAGCTCTACTGCCTCCCGCTGTATGAACTTCTCGAGGCCTTCAATCAGAAGGCGCTCAAATGTGCTTTGGCTCTCCTGGTTCTTATCTTTGTAGCCGTACCTTGCAATACAGCGGAACATGTGATAACCCCTTGTACAAACACGTTGGAAAAGAAACCTTTCAGTCTGGGGAACCACGGGCACTGGTACATTCCTGATGCATACAAAAACGATTATCGAGTGGATTGCAGGAAGGGCAATCAGAAAATGACCAAAAATTGCCGGAACTCCTTTCACTATCTCACTGTAGACCAAGCCTAATCCAGGAGCTCTAATAGTACCAAGGTTGGGCCCCAATTTTCTCATCAAATCCTTTGAAAGCTTCTTTTTAACTTCACTGTCATACTTCAGTTTGCTTCCATAATTCCAGATGAACATAACCATTAGAATACCAGATGCAAAAATTATCAGAGCCCAACCTCCATCTCCAACACTACTTAGAGACGATGAGAAGAAAACCAACTCTAAGGAGAGGAATGTGATGACAAATGACAACACTTTCACAATACTGGTTTCCCAAATTAGAAGCATTATGATTGTAACATAGACTGTGGCCATTATCATCACCCCAAGCTCAGCTATGGCTGTTCAATATGGAACAGGGTAAGCGCATGTAGAACACTGAGCATTACAACTTATTAAAAAGCAGATAAATAGACAGATTTGCACTAAAAAGTATAACCATATAATTAAGTTATTACTAGATGAATACCCTGCCACATTGCTGAGGGAAATTAAGTTGCATAATATGCACAAATAAGATTAAATACGAATATTAAAACTAAAACAAATTGATACTTATGAATTTTGAGGCCTAAAAAATTGAGATTACTTGGTGTTATGAGAGAAGAAAGAAGAGACAATTTGAACCATAGATCTATCATCCAATGGCTAGAAATAATTAAGGTGATGTGGCTTAATGATAGAAGAGAGATAACATTAACTACACTTAGTGGGGATGAACTATACAAGTATATAGGATTACCATATGCATTGCCAACATCATATATGCTTCTGAACAGCAGAATAAAGCCCAAGCAGGAAAACAATAAAAACCAGTTCACGACAGGAATGTATATCTTAGCCATAAATTTCCGAGACGTATGAATGATCTTGAGTCGAGGAAAGCAACCAAGAGCTATTGACTGCTTTAGGCATTGGAATATAGCTGTCGTCATTGTTCTACTAGCAATCAATGCGGCTAAATTGGCTATTAAGAAAACAGGCCAGAAAACTCCACTTGGGATGGATGAGAAGAAGATCTGCTCAGATGAATTTTGGTTTGCAATAAGAAAAGCGCCTTGTCCTAAATAGGCCAAGACAAGGCAAGGAAGAACAAGAAGCGCAAACATTGACTGAACATATCTTACAGGAAAGTAGGAAAGATTTGCAAAGATTGCCTCGGACCCTGTTGCACATAAAAGACAGCCAGCAAGGGACAGCCAAGCCTGAAAGGGATTCCTCCCAAAATAATAAATAATGTAGAGAGGATTAAATGCTTTAAAAGCTGCTGGGCCATATGTACTGAGATTGTATATACCAATTCCTCCGAGACAGCAAAACCATATAAGTAAAGAAGGGCCAAGTGCAAACCCCATTTTGCTAGTGGCATACCTCTGTACACTATACAAGATTACAAGAAGTACAACTGAAATCATCACCACAAGGCCTTGTGAGGCATTTGGTATCCCAACTTTCAAGCCACTGACAGCAGACAGCACTGACATAGCTGGTGTGATAACTCCATTTGATATGAACATTGCAGTCCCAAATAGCACTAGACCTAGAAGCAACTTCTTCAATAGCAATGAAGATTCAAGCTTCTCCTTTACTTTTATGGATCTCTCAAGCTCTGGCGTTGGAAGCTTGAGTCGGAAACTCGACATCCTCTTCTCAGAGTGTACTTGGTTTGGAATGAGACTCACTTTTGCATTTCTGCAAATCAAAGAGTACAACGCAAATATACCACCTTCACCATCATCATTAGCCCAAAGGACGACTAAGACATACTTCACTAGTGGCATCGAAATTAGAGTATAAAGGACAAGTGACAGTGCTCCAAGAACATCCTCCTCTCCAAGAATGGGATACTTGCTGAACATGACATCAAATGTATACAATGGACTTATTCCAATATCTCCAAACACCACAGCAAGAGTCTGAAGGGCAAGAAACATTGTCCTGCCAAAATCAAACTCCTCGCTGTCCTCGATGTGCTGCGCGACGGAGACCTCGTAGCCCTCGACGTCGAACCAGTCGACGGACGGCACGGTGCGGATCAGCTTCTGCTTCTCCCCATCCTCGCCCTCCCCCTCCCCCTCGCCGCCGCCGCCGCCGTCCTCCTCGTCCTCCTCCTCCTCGGACCCGAAGCTCCCGCCCCTGCCCACGGCCCCGACGGCCGCGGCCGCCGCCTCCACCGTGTCCCCGTCCTCCTCCCCCTCGTCGTCCTCCTCCGTGGATACCCACCGCCACTCCATCGACGGCGCCTTCCGCATCCCCCCGCCGCCCATCGCCGACGCCGACGCCGACGACGACGACGACGCGGCCATAGTATCCCGATCGGATCGAGAGGCGAGGCGAGGCGAGGCGAGAAGGGACCAGGAGAAAAATTCGTCTCCGTGTGTTGCGTGTGGAGATGTGGAGGCGCGGATGGAGGAGGAGGAGGAGGAGAGATCAGGAGAGAGAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0280100.1 | 4 | 30953411 | G | A |
| Osa04LNT0280100.1 | 4 | 30954186 | T | C |
| Osa04LNT0280100.1 | 4 | 30954714 | A | G |
| Osa04LNT0280100.1 | 4 | 30956244 | C | T |
| Osa04LNT0280100.1 | 4 | 30956519 | A | G |
| Osa04LNT0280100.1 | 4 | 30956617 | T | A |
| Osa04LNT0280100.1 | 4 | 30956810 | G | A |
| Osa04LNT0280100.1 | 4 | 30957324 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0280100.1 | osa-miR5534b | Cleavage | 3.5 | 18.607 | 1 | 21 |
| Osa04LNT0280100.1 | osa-miR5143b | Cleavage | 4.5 | 14.599 | 1 | 24 |
| Osa04LNT0280100.1 | osa-miR5143b | Cleavage | 4.5 | 10.571 | 1 | 24 |
| Osa04LNT0280100.1 | osa-miR5819 | Cleavage | 1.5 | 20.266 | 1 | 21 |
| Osa04LNT0280100.1 | osa-miR6254 | Cleavage | 5.0 | 17.491 | 1 | 21 |
| Osa04LNT0280100.1 | osa-miR5079b | Translation | 4.0 | 9.873 | 1 | 22 |
| Osa04LNT0280100.1 | osa-miR810b.2 | Cleavage | 5.0 | 14.179 | 1 | 21 |
| Osa04LNT0280100.1 | osa-miR2104 | Cleavage | 5.0 | 14.638 | 1 | 22 |
| Osa04LNT0280100.1 | osa-miR5079a | Translation | 4.0 | 9.873 | 1 | 22 |
| Osa04LNT0280100.1 | osa-miR5143a | Cleavage | 4.5 | 14.599 | 1 | 24 |
| Osa04LNT0280100.1 | osa-miR5143a | Cleavage | 4.5 | 10.571 | 1 | 24 |
| Osa04LNT0280100.1 | osa-miR5145 | Translation | 4.5 | 15.83 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0280100.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0280100.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0280100.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0280100.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0280100.1 | 4 | nan | Morphological trait | Root | RZ23 | RM255 |
| Osa04LNT0280100.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0280100.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM255 |
| Osa04LNT0280100.1 | 4 | qPN-4b | Resistance or Tolerance | Drought tolerance | RM317 | RM255 |
| Osa04LNT0280100.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)