© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0280200.1
AGATCAACAATCTTCCTAATAACTTTGAATCTTGAACGCCTGATTTGTGGCATCACTTCATTAACAACTGAATCAGTTGAACTTCTAAGTGGTATCTAGGACGCACTTGCATTGCATTACCTTATACGAATGATTATCATTCTACAATAATACTACTACAACACGATCAAAATTTTGTTACCTCGCGATCCACACACAACACTATTCTACTATCCTTGAAAACTTAACAGAGCCTTCGTCCACAAGGCTGGTTTGCTTTCTCTTCTTGGATAGCCTCTGGAAACCACTCTGTTCATCAACAAACTGAGCAGCGGTCCTCGCTCGTAGTTCTTCAAGAGTCTCTCCTTCCTTAGCTCGCTCGATCACCAAATGTCGCCCGTAGAGATGAGTGCTCGCAAGTGCTTGGAGAGCGTTCTGCGCCTCTTGCTTTGTGACGAATTCAACAAATGCGAAACCCCTGTGACTCCCAAACTTCATAGGCAGTCTGAGGCTTTTGATCTGAAATTATGTTCCATCGATACACGTAAGCACAAACAAGAGAAAATTCCTTGTGTTCTCAACCTGGCCAAATGGGCTAAATAATTGCCGCAAGTCCTTTTCAGTTGCTTCAAATGCTACATTCCGCACGAGGAGTTTTGTTGAACTCTTATCCTTTTCATTTTTCTTAGTCTGACCATCTTTTCTCCCATGACACAGTTGCAAGATCAAAGCATGTCCATCCAAAACCGTTCCCTGTAGATCCTTGCAGACACTGGTTGCAGTTTCAACTGAGTCGAACTCAACAAAGCCAAATCCCATCGAAACATTCTTGCCATTCTTAATGTGCTTCTTAACCGTTGCACTTTTAAGACTTCCACTCTTCAATTTTGTGCTGAAATGCTGCTTCAAGGATTCATCCGATGTCTTGAAATTCAAATTCTTGACAAATACAGATCGCGACTCCACCCTGTCAGGATCAATCTCTTCAGCACTCACTCCTTCCACAGTTTGCTCTACAATTGCTTTAGTAACAATCCTGTCACCAACAACATCCTTCTCATCATCTTCCACAGGTGCTGAGGTGGGAGATAAAATATTTTCAGGTGCCCACTCCAAATACAGTGGAGTATCCTTGTATCTTGTGTACAGTAACTTTTTGAAAGCATGCCGAGCTTCTGTCGCTTCAACAAAAACTACCAAGGCAAACACTCTGGTTGGAGGGAGGATGATTTTATCCAGGCTTCCATGTTTGCGAAACATTGTGGCAAGATCTTCCTCACAAGAACTATATGGCAAGTTCTTTACCAATATCACATGGTTGCTTCTTTTAAACTTCTCATTTCTTTTGGAAGCAAGCTCTTCCAGTGCAGCAACATTAACTCCAGACCTTGATAAATATTTCTTGGTCTCTGCAATGACATGTGTCTCACCAAGAGCAATACGAACAGCAAGGTCATCTGCTTCTCTATCAAGTAATTCACTTTTACTGATTCCATTCTTCCTTGCTATGTTTTCAGCAACAGTATCTTGGCGCATATAAAAGCTGTTCCAAGCTCTCGTATCCCCACTGATTTCAGAAGCTTTCCTCTGATCCAACTTTTGTTGTTTGAGACTCATTTTCTTCTCTTCGTAACTAGATTCAATCTTTTTATTATTTAGTGGCTTAGCAGCCTTAACACGCAAAAGTCGCCCCTGAAAACTTGAGTTGTCCAATTCAAGTGCCCTGACTGCTGAGTCTGGAAGGCTAAAGAGCACATAACCTCTTCCAGTTGATAGCTTTGTGGTTTTATCAACGACAATACGTGCTTGATCAACATCACCATATTGGCTACACAGCTCCACTAAATCACCTTCAGTAGTTGCATATGGAAGATTGCAGAAAAATAAACGGCCAGTCTCCAGTGCCAACTTCTTCTCGTCAGTAATTAAAGCAGCTTCTTCATCTTCCTTTTCT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0280200.1 | 4 | 31007575 | C | T |
| Osa04LNT0280200.1 | 4 | 31010527 | T | C |
| Osa04LNT0280200.1 | 4 | 31007603 | T | C |
| Osa04LNT0280200.1 | 4 | 31007613 | C | T |
| Osa04LNT0280200.1 | 4 | 31008592 | T | A |
| Osa04LNT0280200.1 | 4 | 31008597 | A | G |
| Osa04LNT0280200.1 | 4 | 31009177 | T | A |
| Osa04LNT0280200.1 | 4 | 31009671 | T | G |
| Osa04LNT0280200.1 | 4 | 31011315 | A | G |
| Osa04LNT0280200.1 | 4 | 31010753 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0280200.1 | osa-miR395b | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395d | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395e | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395g | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395h | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395i | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395j | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395k | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395l | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395s | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395t | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395c | Cleavage | 4.5 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR435 | Translation | 5.0 | 15.605 | 1 | 20 |
| Osa04LNT0280200.1 | osa-miR395m | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395n | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395o | Cleavage | 4.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395p | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395q | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395r | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR820a | Cleavage | 5.0 | 16.146 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR820b | Cleavage | 5.0 | 16.146 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR820c | Cleavage | 5.0 | 16.146 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR1881 | Cleavage | 4.0 | 9.005 | 1 | 24 |
| Osa04LNT0280200.1 | osa-miR2094-5p | Cleavage | 4.5 | 14.681 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395x | Cleavage | 4.5 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR395y | Cleavage | 5.0 | 17.521 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR812k | Translation | 4.0 | 14.345 | 1 | 24 |
| Osa04LNT0280200.1 | osa-miR812l | Translation | 4.0 | 14.345 | 1 | 24 |
| Osa04LNT0280200.1 | osa-miR812m | Translation | 4.0 | 14.345 | 1 | 24 |
| Osa04LNT0280200.1 | osa-miR5147 | Cleavage | 4.5 | 13.827 | 1 | 21 |
| Osa04LNT0280200.1 | osa-miR5155 | Cleavage | 5.0 | 18.581 | 1 | 24 |
| Osa04LNT0280200.1 | osa-miR2275d | Cleavage | 4.5 | 17.122 | 1 | 22 |
| Osa04LNT0280200.1 | osa-miR5830 | Cleavage | 4.5 | 15.687 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0280200.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0280200.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0280200.1 | 4 | nan | Morphological trait | Root | RZ23 | RM255 |
| Osa04LNT0280200.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0280200.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM255 |
| Osa04LNT0280200.1 | 4 | qPN-4b | Resistance or Tolerance | Drought tolerance | RM317 | RM255 |
| Osa04LNT0280200.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0280200.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0280200.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)