© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0280500.1
GGGCATTCAAAGATCTATATTGTTTTGAAGGGGGAAAAAACATCTACAGATTACATGGGAGCAACACAGGACTACAGGAGAAACCAAAATGGCACTGCCACACAAATGTTTTTGTGTGAAAATCAAGATGGCCTTAGAATTTTGGGGGCTACATTACAATACTCACAGATGACACAACATAAAACAACCCGGCCAATATCTGAGGAGCTCACTGAACTGTACAGCATCCATTCATCCCATGACATAGGGAAAATGGAAACCCTGTGATCTTTTTTTTTTTTCTGTTTGAGATGAAATCCTGCAATCCTTTCTCTGCCACTGTTCCACAAATTTGAAGTTACAGAGCTGTTTGTGTCACAGGTCACCTAGAAGGAAATCTCACTCGGCGCATGGAATGTCCGTCCGCGGCAAATGGCTTCCAAGTTTTCTCCAGCATAGGAGCTAAGTGGAGAAACTTCCACACCTGTCATGTACAATGGGACAGAATGGGTCAAGAAGCCACCAGCAGCAACTACCCATCTACTATGGAGACGAAGCAGCATCAGCTTTGCGCTATCAGGGGTATCATAAGACGCGCCATTCGCATTCTTTACAGGCGCAAATTCCTCCTCCCGCAAAACCTCAAAAAGTGCTGTGGATGGGGAGTAACTGAACGCGTCGAATATATACTGTTCAAGCTTCAAGCCCATTGCGTACCCATGGATGGAAGGGATCTTCTTCTCAGCAAGATGATAAGTACTGTCCTTCTCAAGGCTGTTTGCTACTTGATTCAAAAAATCCAAAGTGAACATATGCAAGCAAATATTGCTCCAACAATAACGAAGGCGTCCCGTTGACTGATTAATTTCAGTAGCCATAGCTGCGTCCATTTCACTATACTCAACTACAGAGAGAGGTCCACCACGTCCTCGTCGAACAAATACTCCAACATTCTCTTGTGGGTAAGCCTTCCTAACAACCTTTGCAGCAGAAGATACAGCTTTGTCTATGAAGTAACCTAGGAACGTCGGATCAGCAACGCGGACCAGTGCATTGTCAACCCCGTAGCAATCTACATACTTTACACCCCGTGAAGACATATCTTCCAGCAACCTTCTGGACTTGAGGGCAGCATAAACTCCACCATTGCCATCAGGAGCCTTTGCTACCTTGTATGGTGTCTCCATAATAAATCTGCCATCAGCAGAAACACATGGAAGGGTGCCTTGTTGGAAAAATGTCACTTGGTCTGCCTCTAAGCCAAAGTATTTACGGCTTTCGAAGAATTTGCGAGTGATGTCATCGGTGAAGGGGCTGGTCATTATATACCAATGAATAGGTACGGTGTTATTTGGACTATCACTTGATTGAGCAGCAAGCTTTTGAACACACAAAATCCGTTCAGCTTGGAGTTGGAAAAGCGACTTTCCAGACGGAAGTCCGATACTGAAACATCCTTTAGGATCAGAGCTACCAAGCCGAGTCCCCTGACCACCGGCTAAAAGGACGACGGCTAGCTTCCCCTCCGAAATGGCCTTCAGCCCCTTCTTCCACCACCGTTCTTTGTCCTCCGGCAACCTCTCCTCCACCTTGGACACGCTGGACTCCGGCACCGGCTCGACGGTGGGCAAAGTGAATCCTTGTGATCCAAGGGAGCGCCGGATGATCCGATCAATCCTTGAAAGATCCAGGCTCTCGATGTCCCTGACGAGCAGCTCCCGGTCCTCGGGCGAGAGCTCGTCCCAGAGCGCGAACGCGCCCTCCTGCCCGTAATCCTTCATCCTCTCCAGCATCGCCTGCGGCGGCGCCGCTCCCCACCTCCCCACCGCCGCCGCCGCCGCCACCGACCCAACCACTATCTCCTTCATCCCTCCCCCTCCCTTCTCCTCACCCAAGAAAGAAAATGGTGGGACTAGAGAGAGATCTGTGACTGCAGCAATGGCGCGCTGCGCAAGAAGAGGAGAAGAGATGGAGGAATGCCAACTCGGACGAACGGCGAATCGGATGGATGGATTGTTCTTGGATCGCCGCC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0280500.1 | 4 | 31109438 | T | A |
| Osa04LNT0280500.1 | 4 | 31109633 | T | C |
| Osa04LNT0280500.1 | 4 | 31111045 | A | G |
| Osa04LNT0280500.1 | 4 | 31111169 | A | G |
| Osa04LNT0280500.1 | 4 | 31111592 | G | A |
| Osa04LNT0280500.1 | 4 | 31112207 | A | G |
| Osa04LNT0280500.1 | 4 | 31112727 | A | T |
| Osa04LNT0280500.1 | 4 | 31113360 | A | G |
| Osa04LNT0280500.1 | 4 | 31113060 | A | C |
| Osa04LNT0280500.1 | 4 | 31111423 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0280500.1 | osa-miR5536 | Translation | 5.0 | 16.311 | 1 | 22 |
| Osa04LNT0280500.1 | osa-miR1319b | Cleavage | 3.5 | 6.834 | 1 | 24 |
| Osa04LNT0280500.1 | osa-miR5835 | Cleavage | 4.5 | 6.834 | 1 | 24 |
| Osa04LNT0280500.1 | osa-miR169i-5p.2 | Translation | 4.5 | 15.467 | 1 | 22 |
| Osa04LNT0280500.1 | osa-miR1851 | Translation | 4.0 | 21.452 | 1 | 21 |
| Osa04LNT0280500.1 | osa-miR1851 | Translation | 5.0 | 23.173 | 1 | 21 |
| Osa04LNT0280500.1 | osa-miR2097-5p | Translation | 4.5 | 14.332 | 1 | 22 |
| Osa04LNT0280500.1 | osa-miR2919 | Cleavage | 3.0 | 14.835 | 1 | 19 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0280500.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0280500.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0280500.1 | 4 | nan | Morphological trait | Root | RZ23 | RM255 |
| Osa04LNT0280500.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0280500.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM255 |
| Osa04LNT0280500.1 | 4 | qPN-4b | Resistance or Tolerance | Drought tolerance | RM317 | RM255 |
| Osa04LNT0280500.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0280500.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0280500.1 | 4 | nan | Morphological trait | Root | RM3276 | RM3335 |
| Osa04LNT0280500.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)