>Osa04LNT0280600.1

CACTGGTATTGATGACTGCCCCTGATCACCATTCTGATGCTCCATCTGGGGATTTGCCCCTACAAACTGTAGTGCATGCATATCACTAGGATAGCCTTGGGTTAATTGATTGTTTCCGGGAAATGCCTGCTGTTGCATGGTTGGAAGTGAGGAAGCCTGACCAAACTGATTCAAATTGTTATGAAGATTCTCTGAGGTACCAAGCCCATAGCTCTGACCAAGTATATAATGCCCCTGCATTAATTGATCTGGGAGGAACTGATTTGGAGAATTCCTTGCTTCTGACTGCCTGTTGTCTGGTGTCATATTCAGTTCTCCATCTCTTGTTCCAGTGGCTGCTTCATCAGGGTGCCTTGTGTCTTTTCTTGTTTTCTGCATTTTATTAGTTACCACAGCACTTTTATGGCGATAAACTTCAGTCTTCTTCTTTCCAGTAGATTTCTCAACTTCATTGCTA

Explanation	CPC Score
noncoding (weak)	-0.528777

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0280600.1	4	31250745	G	A
Osa04LNT0280600.1	4	31250910	T	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0280600.1	osa-miR1426	Translation	3.5	12.549	1	21
Osa04LNT0280600.1	osa-miR1430	Cleavage	5.0	17.497	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0280600.1	4	rfw4a	Resistance or Tolerance	Drought tolerance	RM349	RM1136
Osa04LNT0280600.1	4	nan	Morphological trait	Root	RM3276	RM3335
Osa04LNT0280600.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0280600.1	4	OsAOX1a	Resistance or Tolerance	Cold tolerance	R2737	R740
Osa04LNT0280600.1	4	pss4.1	Physiological trait	Source activity	RZ740	RZ590
Osa04LNT0280600.1	4	nan	Morphological trait	Root	RZ23	RM255
Osa04LNT0280600.1	4	nan	Morphological trait	Panicle/flower	RM303	RM348
Osa04LNT0280600.1	4	nan	Morphological trait	Panicle/flower	RM303	RM255
Osa04LNT0280600.1	4	qPN-4b	Resistance or Tolerance	Drought tolerance	RM317	RM255
Osa04LNT0280600.1	4	Xa2	Resistance or Tolerance	Bacterial blight resistance	RM317	RM349

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus