© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0281000.1
GGAGTGGTAATTAAGCAGAATAATTCCTCTTGTGTATAAGTGAACAAATAAAATAGTCTATCATTATCCAAAAAAAATTCTATAGACAGTAGCACAGTGCACGGCCTGTACTTGGAAAGCAACTTTCACAGGCTGTCAGCCTCACGGACTGACAGTTTCGACACACAAAAAAATTATCTGCTCCTCGCAGAAGGGAAAGAATAACAAGTTGTCTGCCACTTTCAGTTTAAGGGGCAGTTGATCCAACGAAAATCACACGCCATCCTAGTCGACGGAGCTCAAGAACGGCGACGAGGTCCGCGGCGAGGCCGGTCCTCCCGGCGCCGAGCTCGACTGCCAGCTGACTTCGCTGTCCAAGTAGCTGGTGTCGCCGCCCTTGAGCTGCCACTCCGTGATGTAGCTCGGCTTCGTCACCACCTCCGGCGCCTCGACGTCGCCGGCGAGCATCGTCACGACCCTCGACATTGGCGGCCGCTGGTGAGGCGAGCCCTGGGTGCAGAGGAGGGCGACGCGGATGGCACGGAGCACCTCCTCCCGGTTGAACTCCTCGAGCTTTGGGTCTACGAGGCCCAGAGGGTTGTTGTTCTCGTACAGATCCCAGGCCCATTCGAAAATATAAATCTTGTCTTCTTCAAGCGCATCATCATAGTTTGGTCGGCCAGCTAAAATCTCCAATAAGACCACGCCAAATGCGAAGACATCAACTTTCTCAGTCATACGGCCTCTCATGGCATACTCAGGTGCAAGATAACCAAATGTACCAGCAACTTTCGTGCTGACATGCGTTTTCTTGTCATCATAAAGTTTGGCCAGCCCGAAATCTGAGATCTTAGGATTGAGATTGGCATCAAGTAAGACATTACTGGCCTTGATGTCCCTGTGAATAACACGGATGCTGGACTCTTCATGAAGATAAGCCAGACCTCTTGCAATGCCTAAGCATATCTCAAAACGTGCTGGCCAGTCAATGTTCAATTTCTCAGTTCCAAATAGTGCTTTATCAAGGCTTCCATTCTCCAAGTACTCATAAAACCAGCAGTGGATGTTTGCCTTCAAGGCAGCAACCATACAACTTCACAAGATTACGGTGTTGCACTCGAGATATAGTTTCTATTTCAGTCGCAAATTGTTGTTTCCCTTGATTAGATGTCTGAGATAGCTGTTTTACTGCCACTACCCTTCCATCAGTTAACTTACCCTTATAAACAGCCCCATATCCTCCTTCACCAAGGCGGTTGCTGAAATTAAAATTTTCAGTTGCAGACCTTAGTTGACCATAACTGAATACATTAGGTCTTCCAACAATACAGTACAGCTCTTGTTGCTCCAATGATAGCTTTCTCCTTTTCTGCATCCACAGAAAGATTGCAGCAAGTGCTACCAAACCAAAAACTGCCACACCAACTACAACTCCAACAATTACACCTGTTTTACTACTACTCTTCCTTTGTGCTGCAGCACTGCGCACCGTAGGGATGAAATTTGGTTTTAAACTCAGAGCCGAGATAGAGGGCCCATAGTAGCCTTGAGCAGGAATGCAGCAAGTGCCCTTGCCAGCCCAGAAGAGATGAATCTCAACAAAGTTTTTGGTGACAGGGATGAGGTACTGCTTCTTAACAGCAGTGTAAGATTTACCGCCTGTGGCCTTCCTGATGTCAAAGTTCCTCTCCTTACGTTCGCCCTGGATATATATATCAAAAACCCTTCTCCCTAAGCTCTTCCAAGACTTTGTATCTTCGAACTCAATCTCTGCAAATTGAAGTGTGACAGTATAGTTTCCATTCTCAAGTCCAATACCATAGTATCGTAAAGATGATGGTGACAGCCTTGCAGTTTGGAACAGTTCTGGATCCAGTGTGCTCTGAAACTGGCGTGAGCTGTTGAATATGTAAATTCCGTTTGATGGTGCATCCATGAACTTTCCAATATTGCTAACACCCCATTTTGTCTCTCCTGTAACATAATATTGTGCAGCTCCAAGACTGACACCATCAGCTTGATACACGTAATTATCCGAGCCTGATATGGATCTGTTGCTACCACAATTCACAGCAAAGGAGGCAGAATGTGGAGAACCAAGAAAGCAGGGCGTGTTTCTCTGAAGGCACTCCAGCCCTGAAGGTAAGACACTGTTATTGGAATTATCGAGCACAAAATTGTTTGCCACCAAATTCAATTGTAAATTCTTCTCATTTGCCCAAGAAGGAAAATTTCCTGAGAGCTGGTTGTAAGAAAAATCTAAAGTTGTAAGTGAAGGTCCTTTTGAGCTTGGAAGGCTTCCTGAAAGACTATTGTTCCCAAGAAATAAGAAGTTGAGCGAATTCAAACCCAACATGGCTTCTGGTACTTGACCAGTGATATTGTTAAAACTCAAATCCAGTAATTTTAAACTTGCAAACTTCGAAAAGTCTATCGATGCAAGATTATCAGATATCTTACAGTTCCTCAAAACCAGTATGCTCAAAGATGTCATGTTACTGATGAATGCCAGTGAAGAGCTTCCATTTTCAATATCACCGATTCGTAAGTTAGTTAGTTGGACAAGTTTAGAAAGAGTAGCTGGAATTGAACCTTGAAAAGAATTGCCCTGAAATCGCAAGTCTGTTAAATTCCAGCTCCCGATATAATCTGGTATTTTCCCAGTAAAATTATTATCTGATGCCCACAATTTTTCCACTTTTGTAAGCTTGGAAAATGATGATGGTAGCTCACCACTTAAGCCAGCACTGTCAATGTACAATCCCGTAAGTTTGTCCAGGTTCCCCAGTTCTGAAGGAAGGGGGCCACTAAAATTGTTTGAGCCCAAACCCAATGATATGAGATTCGTAAGGTTACCAAACTCCTTTGGAATAGATCCAGACAATGCATTGATGCCAAAATTCATGTACTGCATAGCTGTCAACTCCCCTATGAATGATGGAATAGGCCCAGTCAAAATATTTTGTCCTAAGTTCAGATTGGTCAAGCGGGTGAGGTTCCTCAGCTCTTCTGGTATCGGCCCAGACGCATCCATGGCGTATATCTTCAGCTTGGTGATGTGGCAGACGGTGCCGTTCTGGTCGGTGCAGTCGCAGGTGATGGCCGGGTTGAAGCTGTCGTCTTCCGTGGAGGAGCCGTCCGTGGCGCGGCCGGTGCAGGGGTCGCCGGTGATGTTCCATGACGGCTGCGCCTTCTGCCCGAGCTTGGCGAACACCGCGTTCAGCGCCGCCGCTGCAAAATCCACA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0281000.1 | 4 | 31309180 | G | C |
| Osa04LNT0281000.1 | 4 | 31309298 | T | G |
| Osa04LNT0281000.1 | 4 | 31309382 | A | G |
| Osa04LNT0281000.1 | 4 | 31310587 | C | T |
| Osa04LNT0281000.1 | 4 | 31311147 | T | C |
| Osa04LNT0281000.1 | 4 | 31311346 | A | T |
| Osa04LNT0281000.1 | 4 | 31310488 | G | A |
| Osa04LNT0281000.1 | 4 | 31311677 | C | T |
| Osa04LNT0281000.1 | 4 | 31311715 | C | T |
| Osa04LNT0281000.1 | 4 | 31312008 | T | C |
| Osa04LNT0281000.1 | 4 | 31312009 | A | G |
| Osa04LNT0281000.1 | 4 | 31312048 | A | G |
| Osa04LNT0281000.1 | 4 | 31313092 | T | C |
| Osa04LNT0281000.1 | 4 | 31313114 | A | T |
| Osa04LNT0281000.1 | 4 | 31313254 | T | A |
| Osa04LNT0281000.1 | 4 | 31313436 | G | A |
| Osa04LNT0281000.1 | 4 | 31313456 | G | T |
| Osa04LNT0281000.1 | 4 | 31314073 | G | T |
| Osa04LNT0281000.1 | 4 | 31314362 | T | C |
| Osa04LNT0281000.1 | 4 | 31314476 | A | C |
| Osa04LNT0281000.1 | 4 | 31314747 | A | G |
| Osa04LNT0281000.1 | 4 | 31310996 | A | G |
| Osa04LNT0281000.1 | 4 | 31311675 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0281000.1 | osa-miR5540 | Translation | 5.0 | 23.441 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR6248 | Cleavage | 5.0 | 12.094 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR6255 | Translation | 5.0 | 17.549 | 1 | 22 |
| Osa04LNT0281000.1 | osa-miR166a-3p | Translation | 5.0 | 19.816 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR166b-3p | Translation | 5.0 | 19.816 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR166c-3p | Translation | 5.0 | 19.816 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR166d-3p | Translation | 5.0 | 19.816 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR166e-3p | Translation | 4.5 | 19.816 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR166f | Translation | 5.0 | 19.816 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR166g-3p | Translation | 5.0 | 19.816 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR166h-3p | Translation | 5.0 | 19.816 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR166m | Translation | 5.0 | 19.816 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR166j-3p | Translation | 5.0 | 19.816 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR1856 | Cleavage | 5.0 | 8.783 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR1872 | Cleavage | 3.0 | 20.125 | 1 | 24 |
| Osa04LNT0281000.1 | osa-miR1872 | Translation | 4.0 | 23.312 | 1 | 24 |
| Osa04LNT0281000.1 | osa-miR1320-5p | Cleavage | 4.5 | 11.093 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR2928 | Translation | 4.0 | 8.593 | 1 | 20 |
| Osa04LNT0281000.1 | osa-miR2873b | Cleavage | 3.5 | 15.171 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR2873b | Cleavage | 4.5 | 12.33 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR5156 | Cleavage | 4.5 | 13.825 | 1 | 24 |
| Osa04LNT0281000.1 | osa-miR5157a-3p | Cleavage | 3.5 | 11.543 | 1 | 24 |
| Osa04LNT0281000.1 | osa-miR5157b-3p | Cleavage | 3.5 | 11.543 | 1 | 24 |
| Osa04LNT0281000.1 | osa-miR5491 | Cleavage | 4.5 | 13.254 | 1 | 21 |
| Osa04LNT0281000.1 | osa-miR5820 | Cleavage | 5.0 | 13.176 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0281000.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0281000.1 | 4 | nan | Morphological trait | Root | RM3276 | RM3335 |
| Osa04LNT0281000.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0281000.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0281000.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0281000.1 | 4 | nan | Morphological trait | Root | RZ23 | RM255 |
| Osa04LNT0281000.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0281000.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM255 |
| Osa04LNT0281000.1 | 4 | qPN-4b | Resistance or Tolerance | Drought tolerance | RM317 | RM255 |
| Osa04LNT0281000.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)