>Osa04LNT0281200.1

AATGCCAACAAGAACAGCCGGTTAGCCACTGCACATGACAACAGGGTCATCACAATGTGCATCAATCTAGACCAGCACATGCTGCAGGAATCAGACAGCCTGGTCGCCACTGAAAACGTGGCTATCATCGGCTTGGCTGGGTTTCCTCCTACCTAACTTCGGTATCAAATGCATCAATCATTTTCTTGATCTGAACATTGAACATTTCATCATTTCAATGAGCCCATCATAAGACGTGTACTGTTTCTGAGTTCCTCCAAACGCACAAAGATCCATCAAAAACTAAATGAAAAACGAGTGATTTGCAGCAAGTTAGGCAGGATGCGATCTATACTCTTGCAAGTGCATGCATAGCTGAAGCCCAATCAGAGAGCAAGAACAGAAGATTCCCAGAAATAAATAAATAGAGAAGAAAAAAAGAGGAGGAAACAGATGTAATGGATGGAAAAGAAATTCAAGTGCTGACGTTTAAGTAGGAATTGTTAGGTACAATCTCAAAATCTCTTGGCATGAAAGTGTTGACCATCTCTCTCTCTGCGCACGCGCCAATCTGAAACAATCAATCAACCGACCCAGCAGTGCTCGTTTATACTTGTAGGCTTCTGTCATCATCCTTCTTTTTTTTTTCTTCGTGTTTATTTATGGTTGGTTTTCACCGACAAAATACTGACACTTGATCCACCGATGTA

Explanation	CPC Score
noncoding	-1.09932

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0281200.1	4	31401613	A	T
Osa04LNT0281200.1	4	31402171	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0281200.1	osa-miR5081	Translation	4.0	14.564	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0281200.1	4	nan	Morphological trait	Panicle/flower	RM303	RM348
Osa04LNT0281200.1	4	qSN-4b	Resistance or Tolerance	Drought tolerance	RM255	RM349
Osa04LNT0281200.1	4	Xa2	Resistance or Tolerance	Bacterial blight resistance	RM317	RM349
Osa04LNT0281200.1	4	rfw4a	Resistance or Tolerance	Drought tolerance	RM349	RM1136
Osa04LNT0281200.1	4	OsAOX1a	Resistance or Tolerance	Cold tolerance	R2737	R740
Osa04LNT0281200.1	4	nan	Morphological trait	Root	RM3276	RM3335
Osa04LNT0281200.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0281200.1	4	pss4.1	Physiological trait	Source activity	RZ740	RZ590

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus