© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0281500.1
AAGAGTATTAAGAGTATATGACAGTTGTAACAAAACAACTGCATTGAGAACTAGAAGAACAGACAGCCACATGAACCATATTCACTTCTTCAGATCAGAAAGCCTGGTGAACTACCAGTCTACCAATTGCTACCGTAGTCTCCATTTTTCACTTATATGTACATAGGACACCTGCGCTATCAGAATAGCCACAAAGCCAGTTCACTCGCTACAAATTAATCTTGACTAAATCCAAACAGATACCAACTCCTCTTAATCAACTTACAAAACACCTACACTTTTGGTGTCTCTACACCACCAATCACACAAAAGGAAATTAATCATCCACCTACTCGTATCCTACTGTTAGAATGGAGGCCTTACACCAGAGAATGGGCATTGCCAGATTCTGAGACACTGTCCTTTGAGCTCCCTGAATCACTGGATGATGAGGACCCACTGCTCGCGGCCTCAGTATCCTTCTCAATCTCCACTGATTGGTAAGTTGCTGTTGGCATTTCATCCCCGATATCTACATACTCATCCAACTGCTCGGCCTGTGTAGTGATCTTGTCAGGATCCTTGCTCTCTATTGCCATTGTCACATCACCGTTGTCCACCATCGTAGCGGTACTGCCATTCACCAGCATATCACTATCATTAGCCACGGAAGCATCAATGACATCGGCATTTTCACCATTAACAATGGCAGCCCGTCGACTCTTGTTGAGCGCCTTCTTGAAGTTGTTGACGAATCGATCAAGCTCCCACTGTGTCTCGACATCCATCTCATCAATATCCAGCTCGATCTCACCCCCAACCAGCTCAGGATTGCCATTCCTCTTCCGCACAATCTGCAGCACATTATGCATCTTCTCCTCTGGCAAGCTCTCCAACCCAACCCTCAACAAGTTCTTCTCCTCCAGCGTCATATCCCTCTTGTTCGGCTCCCTTGCCTTCGGCTTCCGCATTTTCACATTCGCTGCCCTTGGTTTCACCTGCACCGGAGCTGTCGCCGGTGGCAATTCCGGTGGCGGCACTGGCATCGGCGGCTCAAGGAGCTTGAGTTCCTGCTCGAACCAAGACATAGATGCCTTGTACATCTTCTCAAAGGACGCCAGGAGGTCGCCGGCGAAGGTGTGGACCTCGTGCCCCGCAGGGTTGTATCTCAGCGCGTTGCTGAACGTGAGCCGGACGTCGGCGGCGAAGTCGTCGTGTGAGGGGTACCTTCCGGCGGCGAGGTTCGCCCTCACCGTGCCGAGATCCATGGGGCACTTGATGACTGCGTGGTAGTCGTGGAGCCCGAGGCGGTCGACCTCGACGGGGGCGTTGAACCAGATGCTCCGCTTGTCCTTCCGCAGCTTCGCCAGGATCTGCTCGCAACGCTTCCGCATCGCCGCCCTGAGCTTCGCCGGCGGCGTGGGGAGGTCCCGGCGAGGCGAGCCATGGCGCTTCACCTGACCCTGCTGCCACGTGTCGATCCGGGCGATGAGGGCGCGGACCTGGCCAAGCTCGCCGGCGAGGCGGTCCCGCAGCGCGCGGGCCTCGCGGTGAGCCATTGCCCCCGGCCGCAGCGCCACGTAGCTTGACGGCGGCGGCCTCGTGGCCGAGCCGTTGGCGCGCTGCTGGAGAGGGTGGTTGGGATCGGAATTGGGGGCCACGGGCGCGAGCGGGGCACGGGTCTCCCCCCACTGGTGGTGGTGGTGGTGGTGGTTAACCCCGCCCCGGCCGGCGAGCAGGGCGGAGGCCATCACCGTCGCCGTCGCCGGCGAGGGTTTCGCGTGCTGCTGCTGCTGCGCTGGCGAGAGTGGGTGGATCCGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0281500.1 | 4 | 31645613 | T | A |
| Osa04LNT0281500.1 | 4 | 31646089 | C | T |
| Osa04LNT0281500.1 | 4 | 31646091 | G | A |
| Osa04LNT0281500.1 | 4 | 31646572 | T | C |
| Osa04LNT0281500.1 | 4 | 31648402 | G | A |
| Osa04LNT0281500.1 | 4 | 31648533 | G | A |
| Osa04LNT0281500.1 | 4 | 31648730 | A | G |
| Osa04LNT0281500.1 | 4 | 31650716 | A | G |
| Osa04LNT0281500.1 | 4 | 31650778 | G | A |
| Osa04LNT0281500.1 | 4 | 31650781 | C | A |
| Osa04LNT0281500.1 | 4 | 31655772 | T | C |
| Osa04LNT0281500.1 | 4 | 31655830 | T | C |
| Osa04LNT0281500.1 | 4 | 31656089 | G | T |
| Osa04LNT0281500.1 | 4 | 31656238 | A | G |
| Osa04LNT0281500.1 | 4 | 31656240 | G | A |
| Osa04LNT0281500.1 | 4 | 31656254 | A | G |
| Osa04LNT0281500.1 | 4 | 31656413 | A | G |
| Osa04LNT0281500.1 | 4 | 31656687 | C | T |
| Osa04LNT0281500.1 | 4 | 31656780 | C | T |
| Osa04LNT0281500.1 | 4 | 31656792 | C | T |
| Osa04LNT0281500.1 | 4 | 31656857 | T | C |
| Osa04LNT0281500.1 | 4 | 31656998 | G | A |
| Osa04LNT0281500.1 | 4 | 31656999 | G | A |
| Osa04LNT0281500.1 | 4 | 31657222 | A | G |
| Osa04LNT0281500.1 | 4 | 31657612 | T | C |
| Osa04LNT0281500.1 | 4 | 31658250 | T | A |
| Osa04LNT0281500.1 | 4 | 31658352 | A | C |
| Osa04LNT0281500.1 | 4 | 31658373 | C | T |
| Osa04LNT0281500.1 | 4 | 31658764 | T | C |
| Osa04LNT0281500.1 | 4 | 31658882 | G | A |
| Osa04LNT0281500.1 | 4 | 31659005 | A | C |
| Osa04LNT0281500.1 | 4 | 31660858 | G | A |
| Osa04LNT0281500.1 | 4 | 31660982 | T | C |
| Osa04LNT0281500.1 | 4 | 31661002 | T | C |
| Osa04LNT0281500.1 | 4 | 31661043 | C | G |
| Osa04LNT0281500.1 | 4 | 31661205 | G | A |
| Osa04LNT0281500.1 | 4 | 31661213 | G | A |
| Osa04LNT0281500.1 | 4 | 31661233 | A | G |
| Osa04LNT0281500.1 | 4 | 31661242 | G | C |
| Osa04LNT0281500.1 | 4 | 31661246 | A | G |
| Osa04LNT0281500.1 | 4 | 31661327 | A | G |
| Osa04LNT0281500.1 | 4 | 31661429 | A | C |
| Osa04LNT0281500.1 | 4 | 31662080 | A | T |
| Osa04LNT0281500.1 | 4 | 31662205 | G | A |
| Osa04LNT0281500.1 | 4 | 31663635 | A | G |
| Osa04LNT0281500.1 | 4 | 31663890 | T | C |
| Osa04LNT0281500.1 | 4 | 31664454 | C | T |
| Osa04LNT0281500.1 | 4 | 31664491 | T | C |
| Osa04LNT0281500.1 | 4 | 31664891 | G | C |
| Osa04LNT0281500.1 | 4 | 31665212 | T | C |
| Osa04LNT0281500.1 | 4 | 31665267 | T | C |
| Osa04LNT0281500.1 | 4 | 31665306 | G | A |
| Osa04LNT0281500.1 | 4 | 31665404 | C | G |
| Osa04LNT0281500.1 | 4 | 31658071 | A | G |
| Osa04LNT0281500.1 | 4 | 31665281 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa04LNT0281500.1 | DTM_#DNAt_MULE_japo_Os0037 | Chr4 | - | 31651654 | 31653663 | 2009 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0281500.1 | osa-miR5536 | Cleavage | 3.5 | 14.138 | 1 | 22 |
| Osa04LNT0281500.1 | osa-miR5536 | Translation | 4.5 | 11.483 | 1 | 22 |
| Osa04LNT0281500.1 | osa-miR399h | Translation | 5.0 | 15.195 | 1 | 21 |
| Osa04LNT0281500.1 | osa-miR399k | Translation | 5.0 | 15.195 | 1 | 21 |
| Osa04LNT0281500.1 | osa-miR1429-5p | Cleavage | 5.0 | 18.284 | 1 | 21 |
| Osa04LNT0281500.1 | osa-miR2866 | Cleavage | 5.0 | 24.45 | 1 | 20 |
| Osa04LNT0281500.1 | osa-miR2905 | Cleavage | 3.5 | 9.609 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0281500.1 | 4 | nan | Morphological trait | Root | RG476 | RG214 |
| Osa04LNT0281500.1 | 4 | nan | Morphological trait | Root | RG476 | RG214 |
| Osa04LNT0281500.1 | 4 | Gm7 | Resistance or Tolerance | Insect resistance | nan | nan |
| Osa04LNT0281500.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0281500.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0281500.1 | 4 | qSC-4 | Morphological trait | Panicle/flower | RG776 | RG476 |
| Osa04LNT0281500.1 | 4 | phc4.1 | Resistance or Tolerance | Drought tolerance | RG476 | RG214 |
| Osa04LNT0281500.1 | 4 | phs4.1 | Resistance or Tolerance | Drought tolerance | RG476 | RG214 |
| Osa04LNT0281500.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0281500.1 | 4 | qSN-4b | Resistance or Tolerance | Drought tolerance | RM255 | RM349 |
| Osa04LNT0281500.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0281500.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0281500.1 | 4 | nan | Physiological trait | Source activity | RG143 | RG329 |
| Osa04LNT0281500.1 | 4 | nan | Morphological trait | Root | RM3276 | RM3335 |
| Osa04LNT0281500.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)