© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0281600.1
GTCAAACTTGGGGGCAAAGCACTCATTCATTTTCAATATCGATCGTTTAAATTAATTGTTCGTCACACATACACCATCTTGTTCAGTAATGATGGCTCACATTGTCCGTAATCCCTGCTTAACTACATATTGACTCCCTCATTTTATACTCAACAATACACACCAGACTCCCACACTCCATTTTCACAGTGACTTTATTTAGCGCACCGCAAGCTGCACCAGCACACTCCTCATGCCAAGGAGAAGCAAATAAGATAATTGCTCCAATGCTGCCTTCCTCGAGCAATCAGGGGAATGGCTTAGTGCGCTCGCCGGGTGCCAAGTGCCAAATGGCCTTAGAAGACTATAATTTTTGTGCAGCTCCTGGTCTGTTCACAGCCGGGAGATGAGCAGTGGGACTGAGACAGTGGCGGTCTGCTCCCCCATTGCAGGGTGGCACATCTCCAGCATGTCCAGCTCCCTGAACCGCTCAAGAACCCTCATTCGGCACTCCTCAGCTGCCATCAGACCAGTGGAGAAGGCGCCATGCACCGTGCCAGTGTACTGGACACTGGTGGCTTCTCCAGCAAAGAATAGGTTATCGACTGGGATCCGCAGCTTCTCATACAGGTCACGAGGTTTGCCCACCCCATCGAAGGTGTAGGATCCAAGTGTATTCTCGTCTGAGCCCCAATGTGACACTAGGTAATGTATCGGCTCGGCAGCGTTGGGCAGGATCTTCTTCAGCTGAGAGAAGGCAAATTGGGCAGCAGCCTCATCTGACAGCTTTTCAATGTCACATGCAAGCCGACCCGCAGGCATGTAAACTAGAACAGGATGGCCAGTAGCCTTGTGGAGGTTGAGGAAATAGCTGCAGCCATATGTGGTGGATGAAACTACTCCAAGGAACTCCACATTAGGCCAGAAAACCTCGCTGAAGTGGAGAATTATTTTGTTCTCGACTCCAACTGAGAGTTCTCTTATTGCTTCCTCCTTCCACTCTGGCAGCCTAGGTTCAAATTTAATGGTGTTTGCTTTAAGAACACCTAAGGGGACAGCAATGACTGCAGCATCCGCAACAAATGTTTTACCACTGCTTACAGTAACCTCCACCCTATTCCTGTGGCGAACAATCTCAACAACCCTGTGGCCAAGGCGTATATCTAGGCCTTTTGCCAGAGTATTTATTACTGGACGATATCCACGAACCATGAGACCATGGCCACCAGGAAGCAGTACCTCCTGGTCCCAACCCTGAAGAGAGATTGCGTCCGCATCAGTAGCAAACCAACCTTCCATGCGGCACAAATACCACTGAAGAACATCATGAGCAATCCCTTCTTGCCTCAAGTGTGGATTTCTCTCCATAACAATTGCAATGGCCTTCGCAATAGAAATGTCTTCCTTAGTTTCTTCCCTCAGTTTGCCAGTCTCTTCCAATATAGTCTCAAAAACCTTCCCTATCTTTTCTACCAGCTCTTGGGGAACTTGATGGCCCTTAGTGTCATAGAGAGCATAACTCTCAAGGTCATGATCAAACAGCACAGAGTCATCTCCACTTGTGCGATACAGTGGAAGTCCAAGCCTTCCAATAATTGGTGCCAGGGGATTTTCCTCACAAACACCATGAAGCCAGGATGCTCCCAGATCAACAGGAAAGCCAAAAGAGTAATCAGTGTGAATTCTACCACCTATCCTGTCACGAGATTCTAGAAGAACAACCTCAAATGATGCATTCCTGAGAGCGTTGGCTGCAGCAATGCCTGCAAACCCACTGCCGATAACAATAGCAGAAGGTGTGTGGGACTTTCTCCTAACATTTTCACCATATGAACCAAGTGATGAAATTGCCGATATCGCCTGTTCTTCTCACATCAACCCTCCTCTACCCCCTCCATCATGGAGGGTTAGTAGTGAGGCATGTTCCCCTGTCTCAGAACAATGATGGTGAGGTAAGACAGGACAATTTTAACATTCTGTTGATTCCCCACAGAAACCTAACCGCTTGGTCTGTAGCTACACATTGGAAGCTGAGATGTAGGACTGATCAAATTTTTCGTGTTGTTCGCCATTGTTGGGGTTCTGTTTCTCTCCTTCACGATTACTACTCGAATTCGAATTACAATTGGATGGATTTAACAGAAACTGCGGGGAGAAATGCAGCAGGAAGATGATGAGGCAGGCCACGTAGTGGTTCGAGTTCGAGTTGAGTCCCAGGTTCACGAAACAGTTCATGCAGTCGTGCAGCCAAATCGCCGCAACCTCCTAGCAATTTGATGTCCAACCCTTTCACGATCTCACGTCAGCGCCGAGAATTCGCGCGATCCCATCAACTTCTCAGGCAATCCGGTTTAAGTCTGGATCAACTCCCGCGTGATATCACTCGAGATTTCGATTCGAGGCGCACGCAGTCGATCGGAGCAAGAGCAAAAAAAAACCCGAAGCAGTCTTGCGGCGATCGATCGATCGATGGATCGGATGGTTTTCGCTGGATTTTTGGAGATTTTCGGAGAGGGGGATTTGGTTTTGGGGAGAGGAGGAGAACGAGACCTTCCGCTTTCCTGGCGTTTCGGGAGCTTTTTGGGCTTTTGGAGGTGACGGGATCC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0281600.1 | 4 | 31673643 | T | A |
| Osa04LNT0281600.1 | 4 | 31672793 | T | C |
| Osa04LNT0281600.1 | 4 | 31669322 | A | T |
| Osa04LNT0281600.1 | 4 | 31669457 | C | A |
| Osa04LNT0281600.1 | 4 | 31669588 | T | C |
| Osa04LNT0281600.1 | 4 | 31670015 | G | T |
| Osa04LNT0281600.1 | 4 | 31670221 | A | G |
| Osa04LNT0281600.1 | 4 | 31670265 | T | C |
| Osa04LNT0281600.1 | 4 | 31670344 | G | A |
| Osa04LNT0281600.1 | 4 | 31670539 | A | G |
| Osa04LNT0281600.1 | 4 | 31670857 | C | G |
| Osa04LNT0281600.1 | 4 | 31670919 | C | T |
| Osa04LNT0281600.1 | 4 | 31670970 | T | C |
| Osa04LNT0281600.1 | 4 | 31671058 | G | A |
| Osa04LNT0281600.1 | 4 | 31671271 | T | A |
| Osa04LNT0281600.1 | 4 | 31671625 | G | C |
| Osa04LNT0281600.1 | 4 | 31671647 | A | G |
| Osa04LNT0281600.1 | 4 | 31671750 | A | C |
| Osa04LNT0281600.1 | 4 | 31671761 | C | T |
| Osa04LNT0281600.1 | 4 | 31671786 | T | C |
| Osa04LNT0281600.1 | 4 | 31672716 | A | G |
| Osa04LNT0281600.1 | 4 | 31672903 | G | A |
| Osa04LNT0281600.1 | 4 | 31672947 | A | C |
| Osa04LNT0281600.1 | 4 | 31673829 | A | G |
| Osa04LNT0281600.1 | 4 | 31673969 | C | T |
| Osa04LNT0281600.1 | 4 | 31674174 | C | A |
| Osa04LNT0281600.1 | 4 | 31674325 | A | T |
| Osa04LNT0281600.1 | 4 | 31674568 | C | T |
| Osa04LNT0281600.1 | 4 | 31669472 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0281600.1 | osa-miR1440b | Translation | 5.0 | 16.764 | 1 | 21 |
| Osa04LNT0281600.1 | osa-miR1861o | Cleavage | 4.5 | 23.788 | 1 | 22 |
| Osa04LNT0281600.1 | osa-miR395t | Cleavage | 5.0 | 20.533 | 1 | 21 |
| Osa04LNT0281600.1 | osa-miR444a-3p.2 | Translation | 4.0 | 21.343 | 1 | 21 |
| Osa04LNT0281600.1 | osa-miR530-5p | Translation | 4.5 | 18.508 | 1 | 20 |
| Osa04LNT0281600.1 | osa-miR395o | Cleavage | 5.0 | 20.533 | 1 | 21 |
| Osa04LNT0281600.1 | osa-miR444b.2 | Translation | 3.5 | 21.343 | 1 | 21 |
| Osa04LNT0281600.1 | osa-miR444c.2 | Translation | 3.5 | 21.343 | 1 | 21 |
| Osa04LNT0281600.1 | osa-miR444d.2 | Translation | 4.0 | 21.343 | 1 | 21 |
| Osa04LNT0281600.1 | osa-miR444e | Translation | 4.0 | 21.343 | 1 | 21 |
| Osa04LNT0281600.1 | osa-miR444f | Translation | 3.0 | 21.343 | 1 | 21 |
| Osa04LNT0281600.1 | osa-miR1438 | Cleavage | 5.0 | 11.336 | 1 | 22 |
| Osa04LNT0281600.1 | osa-miR1861a | Cleavage | 4.5 | 23.788 | 1 | 22 |
| Osa04LNT0281600.1 | osa-miR2863a | Cleavage | 5.0 | 22.245 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0281600.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0281600.1 | 4 | nan | Physiological trait | Source activity | RG143 | RG329 |
| Osa04LNT0281600.1 | 4 | nan | Morphological trait | Root | RM3276 | RM3335 |
| Osa04LNT0281600.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0281600.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0281600.1 | 4 | qSN-4b | Resistance or Tolerance | Drought tolerance | RM255 | RM349 |
| Osa04LNT0281600.1 | 4 | nan | Morphological trait | Root | RG476 | RG214 |
| Osa04LNT0281600.1 | 4 | nan | Morphological trait | Root | RG476 | RG214 |
| Osa04LNT0281600.1 | 4 | qSC-4 | Morphological trait | Panicle/flower | RG776 | RG476 |
| Osa04LNT0281600.1 | 4 | phc4.1 | Resistance or Tolerance | Drought tolerance | RG476 | RG214 |
| Osa04LNT0281600.1 | 4 | phs4.1 | Resistance or Tolerance | Drought tolerance | RG476 | RG214 |
| Osa04LNT0281600.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0281600.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0281600.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)