© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0281800.1
CAATAACAGCTTGCCTTCTGTTACTTAATTATCACAAGGGCCATGGTACAAATGCTTTCGATTCAGATATGCCATTTTCCTATATGGGGCCTAGTCCTTCCAAGTTTTTTCTCATTTCTTTTTGTTCCAAGTATGAAGTAACTTTTTTGTATGGCTTTACATCATTATTAAAAGGTTCAAGTATCCTTAAATGGAAGACGAATGAAAATGAAAGATAGCTCAAGTATCCTTATAAGGAAGACAAATAAAAGCGAAAGACAAGTATATATCCTAGAGTACGAGTCTACGCCTTTGGCATCCAGCCATTTATAGTAAGACTTGGCAGAAACAATCTGGATTTGAAGCTTTCACCTAACATTAAGAATCATTTTGTCTTTCTCAAGCGCTGCTTTCATTTGTTGTCAACCTTCATTTCATGACTGTCATCTTGGGGATTATGTACTGCGGTTGAAGCCTCTACCGGAGGTGCAGTTCCTCCTGAGGCTTCTGACTTTGAGTCATCAGCTCCTTTGGAAATGTCTCTCTCTGTGTCCAGCTGCACAGCTTGTTCTGTGCTTTCCGGTGGTTCCATAAAAGTTTGTTGCTTGCTATTTGTAGCATTAGGCTGCTCTTTGGGACCCAAAGATTCCTTTATAGCATCCATTACTGGAACATTAAGCAGATGCCTTTCCCCTGATGACTCTTCAGTGTGCTTTGAAGATTCAGAGACTGTTTGAATCTCATTGACAGTTTTCCCTCCAGCGACTTCCTTGCATGATGCCAATACAGGTTGACCTGATTTAATAGGTACCACAGCAGATAACGGTTGTGGATTCACATGTTCAGTACCCTGCTCGGAGAAAATCCTTGATTCAGCATTACTGGGTGAAACTGAGATAGGTACTGCTGCAACAACCCCAGAACCCATGTGAGGTCTTGGAACGGAAGGGACCGTGTGCTTAGTGAAGGATTTCTCTACAGGCCTCCTCATCTGTAGAGGCTTTGCAAATGTAACATCCTCCAAGGGGACTGGAATAGGACCAGAAGCTTGTCTGTAAACAGTAGATGGCCTCTTTCGAACTTGACTTGGTCGAAGCATAGGGAGATCTGGGGCAAGATCATCTTTTGGTGTTATTGGGCGGAGGTTATTTTCATCTGGAATCCAACCTTTGAGAACCTGATTGTCCTTCACTTTCACCGTAATCAGAGAAAACCCAGGAAATTTCTTCGACATCTTACCAACAAAATACTTGCCAACAATATCATCTTTGACTGAATTACCTTGCAAAGGAGCACTAGTATAAATGGAGGCTTGGCTGAGAGAAGTCTTAACCAGATTGACAGAATCTCTAGGTCCACTGGATCTATTAGCTGGGCCTTGCTTTGTAGGCAAAGCCTGAATTGTGCCTATATTAGGGCCAAAGCTACCACCTGATGTATGGTTGATCTGTATCCCATCCTGTCGGATGTTTGAGCTATCTTGTGTGCTGTGAAGAGGTGGGACGCTCTGAATGTGCTGCACACTATATGGTAATTCATGCATGCCGTACTCATACTTCCGTGGACGACCACGCTTACGCTTAGCACCAGAGCTTAATGTCTGCTCCATGGGTAGTGGTTCATTATGTGCAACAGCTTTATTCTCTTCAGATGTCATCTTTGGCAATTTGCTTTAACTTTTTGCAGCTGAACCTAGGAACGATGATAATGCCCCGTAAAAGTGTATTCACCACCTTCAATTACTTGATGAGTTTTTCTCCCCGTTTCCGTAACCGTTTCAAGGGGCAGACACAACAGGGGGGCCCGAGCATCCCCTGCTGCGGTCCAACCATTCTTCCATTCGTACAAGTGGCAGGGTTGTAGCGTGTGAGTGCAAGCCGACTCTGGTGTGCATGCCGCTTAGTTGAGTTCAGCTGCTCAGGTGTTGGTGCCTCTGCTGTGGGCTGTGGCTCCAATCCGATCCGACCCCGATACGATCGCCGTTCCCGCGCGCGCGAGGAGGCCGCGCACCAAGGGTGATAGTTGATACGGCCACTAAGGGGGGTGAGGCAATCCGCGCCGTGTCTCCGGCGCCCGTTCGGCTTCTCCCCCGCGGCGCGAGGAGAGGAGAGGTGGCGCGCCGAGGCGGCGGAGGAGAGCTCGCCGGGGCACCACCGGCGGAGACACGGAGGAGGAGGAGGAGGAGAGATGGGGAGGAAAACGCGAGAGGGA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0281800.1 | 4 | 31831413 | C | T |
| Osa04LNT0281800.1 | 4 | 31831618 | T | C |
| Osa04LNT0281800.1 | 4 | 31831670 | A | T |
| Osa04LNT0281800.1 | 4 | 31831753 | T | G |
| Osa04LNT0281800.1 | 4 | 31831754 | C | T |
| Osa04LNT0281800.1 | 4 | 31831945 | T | G |
| Osa04LNT0281800.1 | 4 | 31832128 | T | C |
| Osa04LNT0281800.1 | 4 | 31832232 | A | T |
| Osa04LNT0281800.1 | 4 | 31832335 | C | T |
| Osa04LNT0281800.1 | 4 | 31832372 | A | G |
| Osa04LNT0281800.1 | 4 | 31832526 | T | C |
| Osa04LNT0281800.1 | 4 | 31832645 | A | G |
| Osa04LNT0281800.1 | 4 | 31832760 | A | T |
| Osa04LNT0281800.1 | 4 | 31833086 | T | C |
| Osa04LNT0281800.1 | 4 | 31833178 | C | A |
| Osa04LNT0281800.1 | 4 | 31833245 | C | G |
| Osa04LNT0281800.1 | 4 | 31833443 | T | G |
| Osa04LNT0281800.1 | 4 | 31833848 | A | G |
| Osa04LNT0281800.1 | 4 | 31833935 | T | C |
| Osa04LNT0281800.1 | 4 | 31834165 | C | T |
| Osa04LNT0281800.1 | 4 | 31834210 | A | G |
| Osa04LNT0281800.1 | 4 | 31834283 | T | C |
| Osa04LNT0281800.1 | 4 | 31834289 | A | G |
| Osa04LNT0281800.1 | 4 | 31834389 | A | G |
| Osa04LNT0281800.1 | 4 | 31834395 | A | T |
| Osa04LNT0281800.1 | 4 | 31835327 | A | C |
| Osa04LNT0281800.1 | 4 | 31835367 | A | C |
| Osa04LNT0281800.1 | 4 | 31835426 | A | G |
| Osa04LNT0281800.1 | 4 | 31835494 | A | T |
| Osa04LNT0281800.1 | 4 | 31835734 | T | A |
| Osa04LNT0281800.1 | 4 | 31836154 | C | G |
| Osa04LNT0281800.1 | 4 | 31836281 | G | A |
| Osa04LNT0281800.1 | 4 | 31836341 | T | C |
| Osa04LNT0281800.1 | 4 | 31836427 | G | A |
| Osa04LNT0281800.1 | 4 | 31831911 | A | C |
| Osa04LNT0281800.1 | 4 | 31834825 | A | C |
| Osa04LNT0281800.1 | 4 | 31834487 | A | G |
| Osa04LNT0281800.1 | 4 | 31834599 | A | G |
| Osa04LNT0281800.1 | 4 | 31834646 | T | C |
| Osa04LNT0281800.1 | 4 | 31834658 | A | C |
| Osa04LNT0281800.1 | 4 | 31834698 | T | C |
| Osa04LNT0281800.1 | 4 | 31834745 | T | C |
| Osa04LNT0281800.1 | 4 | 31834907 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0281800.1 | osa-miR444a-5p | Cleavage | 4.0 | 14.557 | 1 | 21 |
| Osa04LNT0281800.1 | osa-miR535-5p | Translation | 4.5 | 9.435 | 1 | 21 |
| Osa04LNT0281800.1 | osa-miR1846d-5p | Cleavage | 4.5 | 21.71 | 1 | 22 |
| Osa04LNT0281800.1 | osa-miR5144-3p | Cleavage | 5.0 | 21.16 | 1 | 21 |
| Osa04LNT0281800.1 | osa-miR5509 | Cleavage | 4.5 | 19.605 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0281800.1 | 4 | qSN-4b | Resistance or Tolerance | Drought tolerance | RM255 | RM349 |
| Osa04LNT0281800.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0281800.1 | 4 | nan | Morphological trait | Root | RM3276 | RM3335 |
| Osa04LNT0281800.1 | 4 | nan | Morphological trait | Root | RG476 | RG214 |
| Osa04LNT0281800.1 | 4 | nan | Morphological trait | Root | RG476 | RG214 |
| Osa04LNT0281800.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0281800.1 | 4 | phc4.1 | Resistance or Tolerance | Drought tolerance | RG476 | RG214 |
| Osa04LNT0281800.1 | 4 | phs4.1 | Resistance or Tolerance | Drought tolerance | RG476 | RG214 |
| Osa04LNT0281800.1 | 4 | Ctb1 | Resistance or Tolerance | Cold tolerance | nan | nan |
| Osa04LNT0281800.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0281800.1 | 4 | nan | Physiological trait | Source activity | RG143 | RG329 |
| Osa04LNT0281800.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0281800.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0281800.1 | 4 | qSC-4 | Morphological trait | Panicle/flower | RG776 | RG476 |
| Osa04LNT0281800.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)