© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0281900.1
AATTAACATCGCCTTCATTGAAGCAGCAAGGAAGAACTAATAACAAGCACAGCACACACAATTTTGGATTGAAACAGCACTGATCAAACACTGAAGAGAACTAAAAGTATAAGACAGGGACACAGATCTCTATTCTGCAACTCCTACTAGCTAGCTAGGTACTGGGAAGTCTGAACAACAGAAATTACAGATCAAATTAAGGGGTTTTTTTTGTACTCCAGAAGAACCCTAAATTCATAAGGTAGCAGCATCCGAGAGGCGAACATGAAGAGGAAGTCAATACCCGAACCAACCGCCCTTGCGTAGTGGTGACACATTTTTTTTGAAATTTCCCGAATTTGCGGAAAAACTAGCGAAAAATAATCCAAACTATATATGGGCACCACATGGCAAGGACAGTCTGAGGTGCGTTCTTGACTTCCCACTGATGAAAGCTCCAAAATTTTGCTGCTCCTGAAATTGAAAGCACAAGAAGCTTTTGTTTGATTCAAGGACGAAGCTACTGCGGATTGCTCTCGCCGGAGACGGCCGCCTTGATGCGCTCCACCGTGCAGGCGATGAGGCTGTTCACCGTCGCCACCGACCCCAGCGAGAGCTTCGCCGTCGGGACGGAGTCCACCAGTATCTGGAACGCCACCGTCAGCAGCGACCCGCCGGAGCCGACGCCGACGCCGCCGTCGCCGTCGCCACCGTCGTGCGCCGGCCCATCGGGCAGGATGGCGAAGCCCGATGGCAGCAGCGCGACGTAGTCCGGGTCGCCGCCGTTTAGCACGACGTTCATCGCAACCACGTCCACCGGCGCGTAGATGACGTACGACCCCGACGCGTCCGTGCAGCTCTCCTGCAGGATCAGCATGTTGCTCTGGTTCGAGTTCGAGCTGTTGACGCGAAGAAGTGAGACGCAGTTGCCCTGATCCCGGCCATTGGCGATGTGGGCCATTTCTTGAACGATACCGCCATTGGAGAGGATGTCCCACTCACTGCGAGAGGATTCGTCGCGGAGGAAGTCGAAGACGCGCTTGGGAGGGACGGGGAGCCAGAAGGAGGTGGCGGCGTTGAGGACGATGCCGGGGGGCCTCCCGGGGTCGTCGACGCTCTTCCTCGTCATGACGCGGACGTCCTCGGCGCCGCTGCCGGACAGCGTCGTCCACTGATGCGCCACCGACGCCGTCACGCCGCCGCAGAAGCTCACCACCATCCTCTCCGCCAGCTTCAGCATGCTCTTCCTCCCCTCCGAGCTCGTAATCACGCCGATGTCGCTGGTGGGGATGTTGCTGGCCATGACGCTGGCGAGGCGCTCGCACTGGCGGTCCAGCGTGCCGACCCACCGCCGCGCGCCGAACGCCAGCCCGGAGTTCACCAGCAGCTTGTAGATGTTGTGCACCGACCTGTCGTCCACCTCCACATGCTCCACCCACGTCACCTTGGAGTAGCCATTGGGCATTTCTTGGATGAGGCAGCCTGACGGACGGCGGCGACATTTGAGGACGGGGCTAGGGCGGAGGCTGTCCAGCGAGACGTCGACGACGGCCCATGTCCCGTCTGCGTTCTGCTTGCAGTATCTCACGAAGTAGCTCTCTCTCGTTGGCACCAGTGGCGATGGCACCTGAAACTCCACTGACATCACTTGCAATGCACCGTTGTAGTTCCCCGCGACGCCGGTGGACAGCACCTCCAGCGTGATGGCCCTCGACACGATGTTCGAGAACACTGCCGCGTACTGATTCGCGTCCATGAGGATCTCGACGAGGTTGGCGTGCGTCATGATGACGACGGCGCTGTCGCGGGACGCCTCCGACCTGAGCCCGTACTGCTTGGGGCCGAGCCCTCGGGGGAACATGCGCGCGTACTCCTCCTCGCTGAGCGTCTCCATCGCCGCCGCCGTGGCGTCGAGCGGCGGCGCGACGCTCCAGAGCGGCTCGTCCAGCTGCGCCATGCGGACCAGCTCCTCCATCGCCGCCACGGCGAGCTCCACGATCATCGGCTTGTCGACCTCCGACTGCACCCCGCGCAGCAGCTCCCCGGCGCCACCGCCGCCGAACATGTCGCCCGGCACGCCGTACGGCGCCACGGGGAGGTCCAGCGGCGCCCGCGACGCCGCCGCCGCCATCGGGTTCGACAGCACCGGGAACGGCACCATTGGCTTCCCCACGTACTTCGCCGCGATCGCCGATATCCTATCGATCTCTTCGCGGAGGCGGGCGTTCTCGATGCGGAGGTGGTGCTCGTCGAAGGACATCTCGCCGAGGGCGGCGGGGCCGCCGCAGTTGGGGCAGGAGGCGCTGCTCAGGGCCTCCTTGTACCGCATGTTCTCGGCCCGGAGCTTCTCGTTATCCGACCGCAGCTGCGAGTTCTCGTGCCTCTCATGCTGGTTCTTCATTTGGGTGCGCTTGTTCTGGAACCAGAACTTCACTTGGAGAGGCTCCAGGCCGAGCTCCCGGCTCAGCTCCTTGCGCTGCTTATCATCTGGGTGTGGACATTCCTTGAAGAATGCTTCCATCTCCTGGATCTGATGCTGGGTGTGGCGGTGGTAGCGCTTCTTGCGCGGCCGCTGGTTGGGGTCCTGGTCGTCGACGGAGACGCCGTCGACGTTCTCGCTGCCGGACTTGCTCTCGAACTCGTCGCCGCCGAGAGGGTCGGACGCACGGCTGCGGATCATGTTGTCGCCGCTCTCCGCCGTCGTCGCCGGGATCTGGTCAAGGAGATGATGCTGCTGCTGCTGATGCTGGAACGCTTGCTGGAACTGGTGATTATCCAGCAAGTTTGGCTGGCTGAGTGACAGTGCCGATGAGGATCCGTACGCTGCGCCGTTCCGGCCGATCATCGACGGCATATGCCTCGCCGGGATCATCATTATACTCCTATATCTCAAACCCTAATTCTTGCCCTTGCAGCTCCTTCCATTTCCACTCATGAACACGCGTATATGAGTGTGTCCCAAACCCAAAGAACACACAAAGTGCTAGCTCTAAATATGTAGGGAGATAGAATGATAGATAGATAGATATAGATATATATATATATATCTTGCTTGCCAAGCAACGCAAACGCAAGTAGAAACAGATCTAGCACACAAGCTAGCCCAACGAACCTTGCTGCAGAGAGGAGACAGCCAGCCAGTGAGATCCAAGACAAGAACTACATGCAAATATAGAACTCTTATCTCTGCTTTGCTGTCTCTCCTACCTGCACAAAAGAAGATGTTTCACCGGGTGCAAACAACAAACTGCAAGGTTCAGAGGGCTAGCGAGAGCTAGAGATCACACGGCAAGAGATCAAGGTGAGATCTTCTCGATCAGGATCAGGAGGAGGAGAGGAAGAAGAAGAGGAGAAGAAAAGGGGAACACAGGTGGAAGAGAATGTGGAGAGGGGGGCGAAGGAGTT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0281900.1 | 4 | 31901813 | T | G |
| Osa04LNT0281900.1 | 4 | 31901793 | A | G |
| Osa04LNT0281900.1 | 4 | 31901790 | A | G |
| Osa04LNT0281900.1 | 4 | 31900457 | A | G |
| Osa04LNT0281900.1 | 4 | 31900535 | C | T |
| Osa04LNT0281900.1 | 4 | 31900541 | T | G |
| Osa04LNT0281900.1 | 4 | 31900739 | G | T |
| Osa04LNT0281900.1 | 4 | 31900997 | A | G |
| Osa04LNT0281900.1 | 4 | 31901291 | A | G |
| Osa04LNT0281900.1 | 4 | 31901392 | A | G |
| Osa04LNT0281900.1 | 4 | 31901428 | A | T |
| Osa04LNT0281900.1 | 4 | 31901506 | T | A |
| Osa04LNT0281900.1 | 4 | 31901514 | C | T |
| Osa04LNT0281900.1 | 4 | 31901532 | A | G |
| Osa04LNT0281900.1 | 4 | 31901537 | A | G |
| Osa04LNT0281900.1 | 4 | 31901579 | A | T |
| Osa04LNT0281900.1 | 4 | 31901598 | C | T |
| Osa04LNT0281900.1 | 4 | 31901603 | C | T |
| Osa04LNT0281900.1 | 4 | 31901692 | G | A |
| Osa04LNT0281900.1 | 4 | 31901246 | C | T |
| Osa04LNT0281900.1 | 4 | 31901718 | G | A |
| Osa04LNT0281900.1 | 4 | 31901720 | T | C |
| Osa04LNT0281900.1 | 4 | 31901862 | T | G |
| Osa04LNT0281900.1 | 4 | 31902308 | A | G |
| Osa04LNT0281900.1 | 4 | 31902322 | G | T |
| Osa04LNT0281900.1 | 4 | 31902373 | A | T |
| Osa04LNT0281900.1 | 4 | 31902516 | C | A |
| Osa04LNT0281900.1 | 4 | 31902744 | G | C |
| Osa04LNT0281900.1 | 4 | 31902837 | A | G |
| Osa04LNT0281900.1 | 4 | 31903001 | C | T |
| Osa04LNT0281900.1 | 4 | 31903196 | G | T |
| Osa04LNT0281900.1 | 4 | 31903208 | C | T |
| Osa04LNT0281900.1 | 4 | 31903290 | C | G |
| Osa04LNT0281900.1 | 4 | 31903323 | T | C |
| Osa04LNT0281900.1 | 4 | 31903392 | G | C |
| Osa04LNT0281900.1 | 4 | 31903464 | C | T |
| Osa04LNT0281900.1 | 4 | 31903487 | T | C |
| Osa04LNT0281900.1 | 4 | 31903563 | G | A |
| Osa04LNT0281900.1 | 4 | 31903650 | A | G |
| Osa04LNT0281900.1 | 4 | 31903782 | G | A |
| Osa04LNT0281900.1 | 4 | 31903855 | A | G |
| Osa04LNT0281900.1 | 4 | 31903864 | C | T |
| Osa04LNT0281900.1 | 4 | 31904113 | A | C |
| Osa04LNT0281900.1 | 4 | 31904323 | A | G |
| Osa04LNT0281900.1 | 4 | 31904771 | G | A |
| Osa04LNT0281900.1 | 4 | 31904859 | T | A |
| Osa04LNT0281900.1 | 4 | 31904961 | C | G |
| Osa04LNT0281900.1 | 4 | 31904975 | A | G |
| Osa04LNT0281900.1 | 4 | 31905057 | T | G |
| Osa04LNT0281900.1 | 4 | 31905245 | A | G |
| Osa04LNT0281900.1 | 4 | 31905374 | T | C |
| Osa04LNT0281900.1 | 4 | 31905501 | A | C |
| Osa04LNT0281900.1 | 4 | 31905520 | C | T |
| Osa04LNT0281900.1 | 4 | 31905598 | C | A |
| Osa04LNT0281900.1 | 4 | 31905696 | A | T |
| Osa04LNT0281900.1 | 4 | 31905698 | C | T |
| Osa04LNT0281900.1 | 4 | 31905770 | T | C |
| Osa04LNT0281900.1 | 4 | 31906017 | A | C |
| Osa04LNT0281900.1 | 4 | 31906186 | G | A |
| Osa04LNT0281900.1 | 4 | 31906302 | G | C |
| Osa04LNT0281900.1 | 4 | 31906443 | T | C |
| Osa04LNT0281900.1 | 4 | 31906699 | T | C |
| Osa04LNT0281900.1 | 4 | 31906900 | C | T |
| Osa04LNT0281900.1 | 4 | 31904584 | A | G |
| Osa04LNT0281900.1 | 4 | 31901693 | T | C |
| Osa04LNT0281900.1 | 4 | 31903963 | C | G |
| Osa04LNT0281900.1 | 4 | 31904355 | T | G |
| Osa04LNT0281900.1 | 4 | 31906371 | A | G |
| Osa04LNT0281900.1 | 4 | 31900421 | G | T |
| Osa04LNT0281900.1 | 4 | 31903307 | T | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0281900.1 | osa-miR6251 | Cleavage | 5.0 | 18.751 | 1 | 21 |
| Osa04LNT0281900.1 | osa-miR396e-3p | Cleavage | 5.0 | 24.119 | 1 | 24 |
| Osa04LNT0281900.1 | osa-miR1432-3p | Cleavage | 3.5 | 17.443 | 1 | 21 |
| Osa04LNT0281900.1 | osa-miR1857-5p | Cleavage | 4.0 | 18.174 | 1 | 21 |
| Osa04LNT0281900.1 | osa-miR5160 | Cleavage | 4.0 | 23.058 | 1 | 22 |
| Osa04LNT0281900.1 | osa-miR5515 | Cleavage | 4.5 | 18.315 | 1 | 21 |
| Osa04LNT0281900.1 | osa-miR535-5p | Cleavage | 3.5 | 18.318 | 1 | 21 |
| Osa04LNT0281900.1 | osa-miR2118o | Translation | 4.5 | 21.697 | 1 | 22 |
| Osa04LNT0281900.1 | osa-miR2927 | Cleavage | 4.0 | 15.104 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0281900.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0281900.1 | 4 | qSC-4 | Morphological trait | Panicle/flower | RG776 | RG476 |
| Osa04LNT0281900.1 | 4 | phc4.1 | Resistance or Tolerance | Drought tolerance | RG476 | RG214 |
| Osa04LNT0281900.1 | 4 | phs4.1 | Resistance or Tolerance | Drought tolerance | RG476 | RG214 |
| Osa04LNT0281900.1 | 4 | Ctb1 | Resistance or Tolerance | Cold tolerance | nan | nan |
| Osa04LNT0281900.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0281900.1 | 4 | qSN-4b | Resistance or Tolerance | Drought tolerance | RM255 | RM349 |
| Osa04LNT0281900.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0281900.1 | 4 | nan | Morphological trait | Root | RM3276 | RM3335 |
| Osa04LNT0281900.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0281900.1 | 4 | nan | Physiological trait | Source activity | RG143 | RG329 |
| Osa04LNT0281900.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0281900.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0281900.1 | 4 | qSHT-4 | Morphological trait | Panicle/flower | CDO244 | RG214 |
| Osa04LNT0281900.1 | 4 | nan | Morphological trait | Root | RG476 | RG214 |
| Osa04LNT0281900.1 | 4 | nan | Morphological trait | Root | RG476 | RG214 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)