>Osa04LNT0282000.1

ATCTCCAGAAAAAAAAAATCAGCCAACGTGGCTGTAATTATTGGCACAGCAAAAGGAGCCCCAGGTAAAAATCTGTACACAGATTACAGCTTCAAGGAGGGATTTTGACTAGGGCTTACAATACAGCAAGTGATATTACATTCCTCTGTGATGTTCCACACCATATGTTGCAGCTTGCAACAAGGCGTCTCTACATGGCTAACTTATAACAGAACTGCCTATAAGGATGTCTAGGTAATGTGAGAAAGTTTACACAAAACAGCAGAAACCAATGATGTTACAGTAGTCAAGCAGAGGAGAAGAAGACCAAACAGCAGGCTCATAAAGCCCTTCCACCCGTATTCTTGGCAAATGATGGAGGATGAACAAATGAAAGGGCAGCAAAGTAATCGCTCTGAATACTTAACAATGCTGATAGTCGATAAATTACCATGCACGAAGTTGTCCACAGAAACAATTTTCCCTTGTTATCATCTGAGGGCTCTCACTCAGATCAATGGGTATAAATAATTGTGTTAGTTCTGACCTCCTGAATTCTGATAACATGCAGTCTTCAAAGAACTAATGTCTTGGGCAAAATCACAACATTTGCAACCTTGGAGTTTCTCTGCATTGGTCTTTTGATGTCTGATCTGTACAATTCCTGTATAACATCATGGTGCTGATCTAATTTGGCAATCAACTCCTTAGATCCCCTGGCCTCATTTAATTGGCGGTGCTAGGCCTTGCGCCTTCATCATGCAATGGTATTTTGGGGGTGCTCTTGCGCCCACTTGCATACAAAGCTCAATGACCGCAGGTGCATGACCATAATAGTCTCTCCCAGCGTCGACCAGAACCGGTGGATCATGAGGTCGCTGGTGCCAAACAATCTTTGGAGGAACTAGGTCATCCACATCGGCTTTCTTCCACTTGTGTTTACCACGCCAGCCCTCGAACTTGAATACCCCACACATTCTGGCCTTGTGCCCTGACAGCCCAACATGCACTTCAGAGCAACGCTCACACACTTTGGATGGGTAAACCAATAGGAGTTTTGTCACACCTAATCTAAGCCTTTCCCATGCTTCTATTGTCCTCTGACCTATGAATCTAAGCTCTTCTGGCAAAAAAGCAGCAGGTTTTTCATCATTTTCTCTGACTATTGCAGATGACGTGCCACTCCTATGCCAAACTTCATCAGGTATATCTGCACCTGCCTGATGGCAGAGCTCGAGTACCGCTGGGACACGAGGGAAATCAAACCTCTGGTCATGTTTTATCTCATCCTGGAACGTGTTTTCCAGGTGGAAGGATTCAACAGGGATAAGGATGTCATTCAAGCATCCTGGACCCCATTTATGCGGCTGGTTCTTGATCATACGCTTGAAACCATGACAGGATTGCATCTCATGCCCTACAGCTCCAATATGAACTTCGGGACAAAACTTGCATGAATGTATGGGAACAACTTGAAGCAGCGTCGAGACACCTTTGGTGACAATCTCTCTAGCCTTGACTACCTCCTCCGCTACTGGAATCATGCGCTTGATTGGATACTCCTTTGCCCGGTTCTTTATCCTCTTGAGGATCATAGGCCGAAGCTGCTTCCAGTCCACCCTCGAAGAGTACAGCCTCTGATTCATAACCGAGCCACACAGCTCCGAGCAAATGTAGCCCCCGACTCTCCGCCGCATCAACGCCATTGCCACACACACGCACACACAGCAGAGCACGCTGCACAGGAAGGGGGGCGATCTGACGAGGCCCCGCCACCGGCCTCGACCCGAGGCCGAGGCCGACGAAGCGCCGGCGAGTACGGCGCCGCGGCGGCCTCTGCCCGTGCCCTCTGCGCGTGGGAGG

Explanation	CPC Score
noncoding	-1.12392

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0282000.1	4	31959726	A	G
Osa04LNT0282000.1	4	31959764	T	A
Osa04LNT0282000.1	4	31960081	T	C
Osa04LNT0282000.1	4	31960176	A	G
Osa04LNT0282000.1	4	31960571	A	T
Osa04LNT0282000.1	4	31961600	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0282000.1	osa-miR5143b	Cleavage	4.5	22.209	1	24
Osa04LNT0282000.1	osa-miR160f-3p	Cleavage	5.0	18.845	1	21
Osa04LNT0282000.1	osa-miR408-5p	Cleavage	4.5	19.312	1	21
Osa04LNT0282000.1	osa-miR417	Cleavage	4.0	15.817	1	21
Osa04LNT0282000.1	osa-miR5143a	Cleavage	4.5	22.209	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0282000.1	4	qSN-4b	Resistance or Tolerance	Drought tolerance	RM255	RM349
Osa04LNT0282000.1	4	Xa2	Resistance or Tolerance	Bacterial blight resistance	RM317	RM349
Osa04LNT0282000.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0282000.1	4	nan	Morphological trait	Root	RM3276	RM3335
Osa04LNT0282000.1	4	rfw4a	Resistance or Tolerance	Drought tolerance	RM349	RM1136
Osa04LNT0282000.1	4	nan	Physiological trait	Source activity	RG143	RG329
Osa04LNT0282000.1	4	OsAOX1a	Resistance or Tolerance	Cold tolerance	R2737	R740
Osa04LNT0282000.1	4	nan	Morphological trait	Root	RG476	RG214
Osa04LNT0282000.1	4	nan	Morphological trait	Root	RG476	RG214
Osa04LNT0282000.1	4	qSHT-4	Morphological trait	Panicle/flower	CDO244	RG214
Osa04LNT0282000.1	4	phc4.1	Resistance or Tolerance	Drought tolerance	RG476	RG214
Osa04LNT0282000.1	4	qSC-4	Morphological trait	Panicle/flower	RG776	RG476
Osa04LNT0282000.1	4	pss4.1	Physiological trait	Source activity	RZ740	RZ590
Osa04LNT0282000.1	4	phs4.1	Resistance or Tolerance	Drought tolerance	RG476	RG214
Osa04LNT0282000.1	4	nan	Morphological trait	Panicle/flower	RM303	RM348

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus