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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa04LNT0282400.1

GCTTGCCGACGCGTGGAGGGACATCAGGAACACCATTGCTGAGAACCTGTACCTCCGGTTGGCCGATTCTACTGGTATGCCCACCCTTTTTCCCCTGTTTTTGAACACGACCACCAGGTTACTATCTCCCACAAGCTTGCAAGCTACTGTATGTTTGACGCTGTAACTTCTGTTCACCCACATTCTTCACAGGGTCAAATTCTTGTCATTCTGTCAATGATATGAGGAATAGCGATGTCATTT

Coding Potentia
Explanation CPC Score
noncoding -1.19498
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0282400.1 4 32240299 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0282400.1 osa-miR395b Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395d Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395e Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395g Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395h Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395i Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395j Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395k Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395l Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395s Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395m Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395n Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395p Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395q Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR395r Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR2118d Translation 4.0 16.707 1 22
Osa04LNT0282400.1 osa-miR395y Translation 4.0 14.644 1 21
Osa04LNT0282400.1 osa-miR5496 Translation 5.0 17.446 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0282400.1 4 nan Morphological trait Root RG476 RG214
Osa04LNT0282400.1 4 nan Morphological trait Root RG476 RG214
Osa04LNT0282400.1 4 OsAOX1a Resistance or Tolerance Cold tolerance R2737 R740
Osa04LNT0282400.1 4 pss4.1 Physiological trait Source activity RZ740 RZ590
Osa04LNT0282400.1 4 phc4.1 Resistance or Tolerance Drought tolerance RG476 RG214
Osa04LNT0282400.1 4 phs4.1 Resistance or Tolerance Drought tolerance RG476 RG214
Osa04LNT0282400.1 4 nan Morphological trait Panicle/flower RM303 RM348
Osa04LNT0282400.1 4 qSN-4b Resistance or Tolerance Drought tolerance RM255 RM349
Osa04LNT0282400.1 4 Xa2 Resistance or Tolerance Bacterial blight resistance RM317 RM349
Osa04LNT0282400.1 4 nan Morphological trait Root RM3276 RM3335
Osa04LNT0282400.1 4 rfw4a Resistance or Tolerance Drought tolerance RM349 RM1136
Osa04LNT0282400.1 4 nan Physiological trait Source activity RG143 RG329
Osa04LNT0282400.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0282400.1 4 qSHT-4 Morphological trait Panicle/flower CDO244 RG214
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus