© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0283200.1
GCATCTCAATTTTGCATCATACGTTTCAGGAGGAAGACACATCTTACACCGTTCCAGTTTAAACTTAGGTAGATAGCACAACGACCATAGAAGTTTGCCCTAGTTATCTACATCAACTTAACCACCAAGCCACAAGAAGAAGAAGAAGAAGAAGAAGAAGTGAAACAAGTAACCATTCCAATCACAAGAGCAAAAGACTTATGTCATACTAATCATCGTCAGGCGTGGTGTTGCAGCTGCAGCAACCGCGAGTACGCCCCCTCCGGCCTGGACACGAGATCAGAGTGGCTGCCGTGCTCGACGATCCGGCCATCCTGCACGACGGCGATGCGGTCCACGCCTCGGATCGTCGACAGGCGGTGCGCCACCAGCACGGTGGTCCGCCCCTTCATCAGCCGCTCCAGCGCCTCCTGCAGCACGCACTCCGACTCGGCGTCCAGCGCGCTCGTCGCCTCGTCCAGCAGCAGGATGGCCGGGTCCTTGAGCACCGCCCTGGCAATGGCGATCCGCTGCTTCTGGCCACCGGACAACTGCACGCCTCGCTCGCCGACCGCCGTCTTGTAGCCGTTGGGTAGCTGACTGACGAAGCCGTGCACATTTGCTGTTTTTGCCGCCTGGATCACCTCCTCCTCCGTTGCACCGTCCTTGCCATAGGCAATGTTCTCAAGAATGCTGGCTGCGAAAAGAACAGGCTCCTGCTGCACTAGGCCTATCTTCAGCCGCAAGGCCTTCAAGTTCAGCCTCCTAATGTCCTTGCCGTCAATGGTGACCTTGCCCCCGGTCGGATCATAGAACCGCTCAATGAGAGCAATCACAGTGCTCTTACCAGACCCACTGGCTCCCACCAGAGCTTGACTGCGCCCAGCTTGGATTTTTAGGTTGAAGTCCTTGAAGATTTGGATGTCAGGGCGAGCCGGGTAGGCGAAGTCGACATGCCGAAGCTCAATGTCCCCACGGACATTGGTGACACGCTCTGACTCTGGATCATCAGGCTCGATTCTTGTCGCCCTGTTGAGGATGCCAAAGATGGAGCGGATGGATTCACCTCCACGGACGATCTCTGGGGCAAGGCTGACTGTCTCGGCAACGGAGTTGGCAGTCACAACAAGGACAACAAAGACCTTGATGACCTTGGAGAAGGTGGATCCATGAGACCGGACCAGATGAGAACCATACCACAGAATGAGTGCTTCTGATGAGTACAGGCAGAGCTGTGAGAGGCCAAACAGAAGGCCTGATGTCTGGCTGCGGCGGAGGATCTGCTGTTCAGGTATGCGCAATTCATAACTGAACAGAGAAAGGATCTTGTTCTGAGCATTGAATGCTGCCACTGTGCGGATGTTGCTCACTCCTTCACCGGCAACCATGCTGCTCTTGGCATGCGCCTTTGCTGTGTCACCAGCGAAGCCCTTCATCGAAAGTTGCTGGGCAAAGTTAGCAAGCACAAGAAGAGGGAAGGTGGCCAGGATAAGCAGTGCTACTCTCCACTCAATAATAAAACCAACGATGAACGATGTCATAAGGGAGGTCATGTTCTGCAGAATCACTGATATCCTCTCAGCTATTGCAGACTTCACATCAGCTGCATCAACTGCTAGACGAGCAGCCACAAGACTTGAGTTGTTCTCTTCTTCATCGAACCAACCAACTTCATTCGTAAGTATTGCGGAAAGCATCATCCTCCTAACCCTGGTTGTAAGATTTTCTCCCATGATGCTGAAGAAGTAATGCTGCACGAGATAAGCTACAACAGCATATAGGCCAGTGCCAATATAGATGAACACATACAATTTTGTTTTCTTTTCCATTTCATTGGGGTCCCTGTAGTAGAACACATCAAGCATTTCTCCCATAACAATGGCGAATGTTGGACCAATGAATCCAGAGAGGACAGAACCAACAGCGCCCAACACTGCATAAGGCCATTCAGGAGCATTCAATTTCAGGAGCTTGAAGAAGTAACCTCGTGGTGCTGGGTATTTACGGTCATTATCTGCATTTGAAATCATCTCAATGCGACCATTTGCCCCAGTACTGTACTGATAGCTCAGGTTCCTTAAACTTCCAGACCTGAGGCTGAGAGATTTTGTGGAAAGTGAACTGGTCAGGTGCATCGAGCGTGACCTGCGGGTAGATGCACCACCAAGGTCTCTGTTTTGTGCCATTTCTTGAAAACGAATCAGGGAGGCATACGCTCCAGAGCTCCCTTTTGCTAGAAGTTCATCATGTGTGCCAGTCTCAACAACTTGGCCCTGCTGGATGACTGCGATCATGTTAACATTTCTTATAGTGGAGAGACGGTGGGCAACAACTACCGTTGTTCTTCCAGTCATCAGCCGGTCTAGAGCTTCTTGGACAATGTTTTCTGAGCCTGCATCTAGAGCACTTGTAGCTTCATCAAGGAGCAGTATCTTAGGGTTCTTCAGCATAGCACGAGCTATTGCAATACGCTGTTTCTGACCACCAGACAGCTGTATTCCTCGTTCCCCTACCATCGTGTTGTAGCCATTCGGAAGAGTAGATATAAAACTATGAGCATTGGATGCAGTTGCTGCAGCCTCGACTTCAGCCATTGTAGCATCAGGCTTTCCATACAATATGTTCTCATGTATAGTTGTTGCAAAAAGAGCAGGTTCTTGGTTTACAAGACCAATCTGATCTCTCAGCCACCTCAACTGAAGTGTCTTAATATCAACATTGTCAAGCAAAACCTGGCCTTCATTAGGATCATAAAACCTTTCTATCAAAGCCACAACAGTACTCTTGCCCGACCCACTTCCTCCAACAACCGCAACAGTTTTCGCAGCAGGGAAGAAAAGGGAGAAATCCCGAAAGATCATGACATCAGGCCTTGACGGATAACTAAAAGTAACATCTTTGAATTCTATGTTTCCATGGACCTCTGCCAGCAACTTCCCATCCTTATGATCATGAACTATAGAGGGTTTCTGGCGAATGACCTCCAACAGTTTGTAACCAGCAATCTTCCCTTTGCTGAAGGCTCCAAGATTTGAGAATGCCTGGCCAAGACTCATGCCACCAACAATAGCAGAGAAGATAGCTGTAAAGGCTTTGCCACCGTCAGTCTGCCCATTCCTGATGAAGACACCAGCGTACCAGAATACCAATGCCCATGACATGCATGCTATACCATATGTACACCCAATACCCAAACCTTTTGCCATCCCAGCTTTGTACCCAAGCTTCAGGGTATTCTGAATTGCTTCAGAGTAGGAATTGAGTGCTTTGCTCTCTCCAGCAAATG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0283200.1 | 4 | 32672415 | A | C |
| Osa04LNT0283200.1 | 4 | 32672470 | T | C |
| Osa04LNT0283200.1 | 4 | 32672482 | A | G |
| Osa04LNT0283200.1 | 4 | 32673364 | A | T |
| Osa04LNT0283200.1 | 4 | 32673571 | G | A |
| Osa04LNT0283200.1 | 4 | 32673736 | T | C |
| Osa04LNT0283200.1 | 4 | 32674022 | G | A |
| Osa04LNT0283200.1 | 4 | 32674717 | G | A |
| Osa04LNT0283200.1 | 4 | 32675014 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0283200.1 | osa-miR5533 | Cleavage | 4.0 | 14.129 | 1 | 21 |
| Osa04LNT0283200.1 | osa-miR5533 | Cleavage | 5.0 | 21.375 | 1 | 21 |
| Osa04LNT0283200.1 | osa-miR5536 | Cleavage | 5.0 | 16.121 | 1 | 22 |
| Osa04LNT0283200.1 | osa-miR5536 | Translation | 5.0 | 16.07 | 1 | 22 |
| Osa04LNT0283200.1 | osa-miR5804 | Translation | 5.0 | 9.634 | 1 | 21 |
| Osa04LNT0283200.1 | osa-miR168b | Cleavage | 3.5 | 22.219 | 1 | 21 |
| Osa04LNT0283200.1 | osa-miR172c | Cleavage | 5.0 | 18.217 | 1 | 21 |
| Osa04LNT0283200.1 | osa-miR413 | Cleavage | 3.5 | 6.714 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0283200.1 | 4 | gpps4.1 | Resistance or Tolerance | Drought tolerance | RG214 | RG620 |
| Osa04LNT0283200.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0283200.1 | 4 | qSN-4b | Resistance or Tolerance | Drought tolerance | RM255 | RM349 |
| Osa04LNT0283200.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0283200.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0283200.1 | 4 | np4 | Morphological trait | Seed | RG143 | RG214 |
| Osa04LNT0283200.1 | 4 | nan | Morphological trait | Root | RM3276 | RM3335 |
| Osa04LNT0283200.1 | 4 | np4 | Morphological trait | Panicle/flower | RG143 | RG214 |
| Osa04LNT0283200.1 | 4 | tgwt4 | Morphological trait | Seed | RG143 | RG214 |
| Osa04LNT0283200.1 | 4 | tgwt4 | Morphological trait | Seed | RG143 | RG214 |
| Osa04LNT0283200.1 | 4 | nan | Physiological trait | Source activity | RG143 | RG329 |
| Osa04LNT0283200.1 | 4 | nan | Morphological trait | Panicle/flower | RG143 | RG214 |
| Osa04LNT0283200.1 | 4 | nan | Morphological trait | Panicle/flower | RG620 | RG214 |
| Osa04LNT0283200.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0283200.1 | 4 | QGwp4 | Physiological trait | Source activity | RG143 | RG214 |
| Osa04LNT0283200.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0283200.1 | 4 | rpf4.1 | Resistance or Tolerance | Drought tolerance | RG214 | RG620 |
| Osa04LNT0283200.1 | 4 | nan | Physiological trait | Eating quality | RZ590 | RG214 |
| Osa04LNT0283200.1 | 4 | nan | Physiological trait | Eating quality | RZ590 | RG214 |
| Osa04LNT0283200.1 | 4 | nan | Morphological trait | Root | RG214 | C1016 |
| Osa04LNT0283200.1 | 4 | QGn4 | Morphological trait | Panicle/flower | RG143 | RG214 |
| Osa04LNT0283200.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)