© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0283500.1
GCTGCAAATATTAGCTATTTCGTTGGAACAGTATTCCGTTAATGTCGTCTCCCAAATTCTGAAAACCCCCTACAACACAGTTTTGCAAAACCGCGGCCAACGCAGGTACGTGGTCTCGCTTGCTGCATCCGCTACTGTCGCTGGCCCTAGCCGCCGTGCGACAATGGTGATACGCCGGCAAGCCGGAGCTGTCGATGCTGCTGCGTGGGCTCGCGGCTCCTCTAGGAGGCGGCAAGCAATCTCGACATGGCGACCCCCTTCCTGAAGGATCAGGGAATCTTGACTGGCAGAAATGGACCCCCTTCCTGAAGCCGCCAATCTCCGACGATCAGGCAGGAGTCGGGATCAGGGAATCTTATACCGGCAGAAACGGAGCTGGAACAATTCGATCCTGGCTTGCTGTGCGCGTAACAGATGCTCATGCATCTCCGCTTGGACTATCAATGAGTCCTCCTCTGCCTTCCATCCCTTCCTGATATTGATTTTGCCGTCGGCTGTTTGCATGTTAGAGGCATATTTAGGCATATCTTGTAACTTATAGTCAAACTTTTACCTGTGACTTGTACAGGAAAAAAAGTATAGTGCCAAACTCTACAAGAAGGATCTTAGGGCCGTCACAACCTTCTCTGGCCAGTCCTCTTGAGGCATATGACCAGCTCCTTCTATTGGCTCCAATTTTATGGCTGCAGGATTACCTTTCTGGAACTCCTCAGCTATGGGGAGTGGCAAGTACTTATCAGAAATCCCCCATGCAAGCAATATTGGTTTTTCCCAGCTGTTGGATGCAAACCCGGCTGAAATTCTACTTAATACATCTCGGAAGTTAGCTTTCCTGGCAGCTTCAAGCAATGCAAATCCAGGTGCACCACTTGATAGATATGGTAATCTGTATACATCAGCCTTCTCCGACTTTAGCACATAGGGGCTACCTGCTTCAATGAATCTCTCAGCCAAAACAGCATTTTGGCAGGTAAATTCACCAAAAAGTGGCAACCTTAGCTGGTTAAACAATCCAGGCACTGGAGAAGAAACAGTGAGTGGACTGTTAAGAATTGCTACCTTCAGAACTTTGCTTGAGTTCTTTAGTGCCCATGTTAGCCCATATGAACCTACAAGAAATCCCTGGACAACTAAGAAGAATGGCTCAGTGATATTTAAAGTACTAAGAAGCTCATCGAGTGACTTGTGGAACTCCTCTTCTGTGTAGTCGAATCCATATCCGGGCTGTGGCATATCACTGAACCCAAATCCTATCCAATCAGGAGCAAAGCAGTGGTAGCCAGCATCTGCCATCTGAGACATAACCATACGATAGCTAAATGACTGAGATGGAGCACCGTGAATAAACACGACAGTCCCACGTCGTGCACCAGCGGAACCTGTTTCCCTCACAAACCACCGCAGCTTTCCTGATTTCACTCTTGAGCCGAACTCCCTCCCCTTGTCCTCGATCCTGTAGAGCATCTGGCCGACATTGCCGTCCTGGGCGGGCGACTCCGGCAGCTGGATGGCGCCGCGGCTCGACGGGTTGTCCGTCACGAACCCGAACGGGTTGAACTCCGACTCCTCCTCCTGCTTTTTCCCCTCCGCCGTCTCATCCTTGCTGCCGCTCGCCGCGACTACCAAACTCCGCTTCGCTCCTCCTCCACGCGCCCTCCAAGCGGCGGCGTTGGCGCTGCTGCCGCCGCCGCCGGACCACCTGCCTCTGCAAGCGGGGCGTGGCAGGGAGAGAGGAGACGAGGTGGTGGTGGTGCAGGGGCAGCAGGACATGGCGGCGGCGTTCGGGTGGGTGTGCGCGCGCGCGCTCCGGCGAGACGTGGCGGCGCGGCGAGACGCTTTCGGTTGGCGCAGCCGCGTCGAACGGTCGGGAAGAAAGAAGATTCTCCGCGAATTGCGGTGGGGCCGACAAGATCACTTCTCATGTGGCTCCCGTGCACAACCGCAGGTGAGCCACTCTCTCACTCTACTCTAGTCTAGTGGCCACAATTGAATCACTCTGGAAATCCATGAATTTTCTAACAACAAAACTTCACAATTCAGCAACACAAGATGGCTATGTACTGTACAACTTATTGGTAAATTCGCCATAAAGGCAACATCATCTAGAGAAAGTTTGAGGAGCTCTTTGTTGTCCACCAAATGGAGGAGTTGTTCTATGTTTTTTTTTCTCTAGTTGTTCAGAATGCAATTGGGAATGGGTATAATCTGTGCAACCAATCATGCAGAATGTTATCCTTGAGCTTGGTGTTGTGGCCTGCAACCTCCTGGTCCATTTCCATAGCTGGGGTTATGGTAGCCTGGTTTGTTGCCAGAGCCTGATGGACCATTTGATCTTCCAGGATGTCCGTAGTGATGGTGATGGTGTTCTTGCCCTGGATGCAGAACTGGACGCCAAGGGCCAGGGGGAGCAAAATTGCTAGGTGGCCTCACGTGTCCTGGAGTAAATGGAGGACAAGGATGTGGAGGAGCATGACGAGGAAATGGGCCTTGATTTGCATGGAACGGAGGACGCCAAGGATATAAGTCTTGACCTGCAAATGGAGGACAACGCCGAGGAAAGAAGCCTTGATTTGGTAGTACAGGTGGAGGATGCCGAGGAACGAAGCCTTGACCAGCTAATGCAGGAGGAGGACACCGAGGAGCAAGGCCTTGATCTTCTAGTACAGGAGGAGGAAGCCGAGGAACATAACCTTGATCTGCTAGTACAGGAGGATGCCGAGCTGCTAACCGTTGATCCCCTTGTGCAGGTGGAGGATGCCGAGGAAACGAGACTTGATCTCTTGGTATGTTCAGACATCCAGATGGCATATTTGGATCATGACCAGAAGAGATGTCTTCTACTTCAAGTGGAGTATAAGATTTCTGAGTAATTGGAGGAAACACTTGTGATGGTGCTTTAGACCCTGTGGAGTTCTTCAAAGATGGTGATGTATGTTTACTTGAACCGCTTTGATGCAGTTTCTCATTATCCAACCCCTGGAAGTGACACTCTGGCATGTCTTCAGCATCAATGTCATCTTTGCTCTTGAAGTTCTCTATTTCTGCCTTGCGATGAGATACTTGATTCGTTATCTCCCTTGAAATCATGTCTGTGACATTTTCTTTCACCTCAACCTTTTCATGATTCTTGATGCCTTCAACTTGAAATGATGGTTGCGATGATTGCTGGAATGGACTGTTTGACTTCTTATCAGATAACCTAGGGCAAATCAGCACATCAGAAGTTATTGTAGTTTCCCTGTTGATTGGATGCACATCAAATTTCAACTCAACTCTATGGAGATTAGCGAAGTCAACTTTTGGAAGGTCATCTATATCATTAGCTCTATGAGCACCATAAGTATCAGGCTGCAGCAAAAATGGATTAGTCTCCTGTTGTTTTGAAGACTCAACAGCATTTGATGCATATTCTTGAGTTATGCTGCCTGAGAAGGCCTCCGCCATATGATTCTTTTGTGCAGCTAAATCATAGTGGGTAGTTCTCTGCTGAACATGCAAGGATTTCAGAGACAATCCTTGAGAATGTGAAGTAGGATGCCACACTCCAAAAGATCCAGAATGAGAATCTATGATGGACTGAACATGTTGCTGAATTTCTGGGACTTCATGCGATGCCAATTCGAACGGTGAAACCTGTGACAACTGGCATCCTATTAGTGATGGTGCTTTGAACGGTGGCTGCGGGGTTAGCTTTGATGCAAGTTTGAATAGAGAATGGGGCACTACTTTTTCTGTAGGATCTCTTTCACCAGTACTCTTAGCATGCCCACACTGAGATAGCAAACCAGTTGCCACAGGATGCGTTTTCACAGAATTGCTCTGAATTTCTTGCATTTGATCAATATCATTCTGAATATTGCCTGTGTTTGTTCTAGAGTCCATGCCAGGATTGTTGGAGCATGATGTTGCCTGATGTCCATCTGAAAATGGCAACGAAGTTGGATGCCTTGCTCCAACATGAGGCACACAAGGAGATCCCTTTCCAATAGTTTCAGACCTGCTATGATCCACAATTTTTGACAGTGGATTTCGGCGCCACACAATGCACCCTATCAACGAGTCTTGGTTTGTATCAGCTGCTGACATGCCTTTAAAGAAACCACATTTCGCTAGGATTGTAATTACAGCATCACTTCTGGGGCAGACATAGAGATTGGAACCATCACATACATCTGCAAAACCAACCTTCTGGCTCGCTTCAAAGTTCTCGGCAACCTCTTTCATTCCCAGTAAGCCAGCTTTTGATGTCCCAAACTTCCAACAAAGAGAAATTACCATCAAAGATCGGGTTTGACATCGACGGAGTTCCTGGACAAACTTTTCAAACACATCTAATTTCACTCTCCCTTTGATTTCTATGATTTTCGGCCAAGTAATGTCGTGATTTTTTTCTCCGCTTTTGAAGAAGGCGATCACAGACACCTTGACAGTGCTACTCAACTGGATTGTACCATCACATAGGCTTTCATAAGCAGAAGGAGATAGCAGGCCAACAACTGACATGATTTCATCATCCAAAGAATGAGGAGACAATATACTAGAACTATCATCTGCTTTTGTAGAACCTTGTACATCATGTTTAGCTTCATAGCTTGATATCCCTTGCTTCTGTTGAATTTTTTCAAGGGAACTCTGAGAAGGGTGAACCATAGCTACAATACTCTGATCACCCTTTTCACAGCTGAAAAGTAACTTATGAGCCACAGCTGTCTGGCTCTGATCTGTTGAATCTGCATACTTAGCACAACTATTACTAGACTCTATTTTAGTGTGCATTAGTTGAAAAGTAATATGTGGATGCATAGGTTTGCTTGGTGTTGTATGATTTGTACACTCCATCAATAGAGAGAACGATTGAGTAGTATCCTGACAGTTTGATGTGCCATTATTTGTTGAAATGGTGTGCAGTATGGTTTCATTTGGTTTGCATGAACTAGTTGTACATCTAATGCCACTCAGTTCTGTGGTTCCTGACAGAATATCTTGAGGAGCAAAACCCTGTGAGTTACTCAAAATAGAGCTCAACCCAGCTGGACCATTTAGAAATGATTCTTCACCTTGATGACTATCTTTAGCACTAGTGACTAACCCAGATCCATGAGAAACGGCCCTATTAGATTCACTGTAGTGAACAGAGTTCAAAAATTTTCTTTTTCTTGGCGTATAAACCTGAAAAATCATGTCGGGGGAATTACTTTGGCCCGACATCCTTTCCTCTGGAACAGAAATATTATATGGTTGTTTGTTCCACGCTGTTGCGAAGGCAGAATTAAAGGAATGAAATCAACTGTAGATTGCAGCACTGCTTCCAACAATAGCAGAATGCCAGAATATGAAGCCAGCGGCGAAAAGAGGCCGCTGCCACCGCCGCCTCCGGTGGCTAAGGGGATCCACAAGCTGAAGCATGTCCGAGAAAAACTCGCGGCGGAGGGATTTGTGGAGGAGGAGGAGGAGGAGGAGGAAGCACGAGTTCACCTGGGAGAGATGAAGTTGCGAGGGTTTTGGGCGTCGGAACTCGGAACTGTCCGATCGACGCGGCGTCGAGCAGGCGAGCGGCCGCAGCCTACAGGAAGCAACCGTCGGAGTCGGACGACGAAAACACTAGCGCACGCGTTAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0283500.1 | 4 | 32803607 | C | T |
| Osa04LNT0283500.1 | 4 | 32801360 | C | G |
| Osa04LNT0283500.1 | 4 | 32803339 | A | G |
| Osa04LNT0283500.1 | 4 | 32803393 | G | A |
| Osa04LNT0283500.1 | 4 | 32803457 | A | G |
| Osa04LNT0283500.1 | 4 | 32803801 | C | A |
| Osa04LNT0283500.1 | 4 | 32803968 | T | C |
| Osa04LNT0283500.1 | 4 | 32805877 | A | G |
| Osa04LNT0283500.1 | 4 | 32807357 | A | G |
| Osa04LNT0283500.1 | 4 | 32807414 | A | G |
| Osa04LNT0283500.1 | 4 | 32807448 | A | C |
| Osa04LNT0283500.1 | 4 | 32807822 | G | A |
| Osa04LNT0283500.1 | 4 | 32808370 | T | C |
| Osa04LNT0283500.1 | 4 | 32809201 | A | G |
| Osa04LNT0283500.1 | 4 | 32809444 | G | T |
| Osa04LNT0283500.1 | 4 | 32809478 | T | A |
| Osa04LNT0283500.1 | 4 | 32809671 | T | A |
| Osa04LNT0283500.1 | 4 | 32810475 | A | C |
| Osa04LNT0283500.1 | 4 | 32810698 | T | G |
| Osa04LNT0283500.1 | 4 | 32811468 | T | C |
| Osa04LNT0283500.1 | 4 | 32812276 | A | G |
| Osa04LNT0283500.1 | 4 | 32812892 | C | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0283500.1 | osa-miR5541 | Cleavage | 4.0 | 13.474 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR5824 | Cleavage | 2.5 | 16.583 | 1 | 24 |
| Osa04LNT0283500.1 | osa-miR6254 | Translation | 4.5 | 22.269 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR167a-5p | Cleavage | 4.5 | 11.001 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR167b | Cleavage | 4.5 | 11.001 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR167c-5p | Cleavage | 4.5 | 11.001 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR396c-3p | Cleavage | 5.0 | 11.648 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR160f-3p | Cleavage | 4.0 | 21.238 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR167h-3p | Cleavage | 3.5 | 16.163 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR167h-3p | Cleavage | 5.0 | 17.152 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR437 | Cleavage | 4.5 | 14.995 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR810b.2 | Cleavage | 5.0 | 14.212 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR1857-3p | Cleavage | 5.0 | 21.05 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR1874-5p | Translation | 5.0 | 24.621 | 1 | 24 |
| Osa04LNT0283500.1 | osa-miR827 | Translation | 4.5 | 22.462 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR396f-3p | Cleavage | 4.5 | 20.53 | 1 | 24 |
| Osa04LNT0283500.1 | osa-miR2104 | Translation | 4.5 | 12.141 | 1 | 22 |
| Osa04LNT0283500.1 | osa-miR2864.1 | Cleavage | 4.5 | 24.57 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR2920 | Cleavage | 2.0 | 18.312 | 1 | 23 |
| Osa04LNT0283500.1 | osa-miR2923 | Translation | 5.0 | 15.338 | 1 | 22 |
| Osa04LNT0283500.1 | osa-miR2929 | Cleavage | 4.0 | 24.513 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR2929 | Cleavage | 4.5 | 16.5 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR5080 | Cleavage | 5.0 | 19.278 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR5080 | Cleavage | 5.0 | 15.926 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR5340 | Cleavage | 4.5 | 15.624 | 1 | 23 |
| Osa04LNT0283500.1 | osa-miR5487 | Cleavage | 5.0 | 16.29 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR5491 | Translation | 4.5 | 14.707 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR5496 | Cleavage | 5.0 | 13.051 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR2275c | Cleavage | 4.0 | 17.078 | 1 | 23 |
| Osa04LNT0283500.1 | osa-miR5519 | Cleavage | 4.0 | 14.18 | 1 | 21 |
| Osa04LNT0283500.1 | osa-miR5522 | Translation | 5.0 | 17.881 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0283500.1 | 4 | rpf4.1 | Resistance or Tolerance | Drought tolerance | RG214 | RG620 |
| Osa04LNT0283500.1 | 4 | nan | Physiological trait | Eating quality | RZ590 | RG214 |
| Osa04LNT0283500.1 | 4 | nan | Physiological trait | Eating quality | RZ590 | RG214 |
| Osa04LNT0283500.1 | 4 | nan | Morphological trait | Root | RG214 | C1016 |
| Osa04LNT0283500.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0283500.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0283500.1 | 4 | gpps4.1 | Resistance or Tolerance | Drought tolerance | RG214 | RG620 |
| Osa04LNT0283500.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0283500.1 | 4 | qSN-4b | Resistance or Tolerance | Drought tolerance | RM255 | RM349 |
| Osa04LNT0283500.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0283500.1 | 4 | nan | Morphological trait | Root | RM3276 | RM3335 |
| Osa04LNT0283500.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0283500.1 | 4 | np4 | Morphological trait | Seed | RG143 | RG214 |
| Osa04LNT0283500.1 | 4 | tgwt4 | Morphological trait | Seed | RG143 | RG214 |
| Osa04LNT0283500.1 | 4 | np4 | Morphological trait | Panicle/flower | RG143 | RG214 |
| Osa04LNT0283500.1 | 4 | tgwt4 | Morphological trait | Seed | RG143 | RG214 |
| Osa04LNT0283500.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0283500.1 | 4 | nan | Morphological trait | Panicle/flower | RG143 | RG214 |
| Osa04LNT0283500.1 | 4 | nan | Physiological trait | Source activity | RG143 | RG329 |
| Osa04LNT0283500.1 | 4 | QGwp4 | Physiological trait | Source activity | RG143 | RG214 |
| Osa04LNT0283500.1 | 4 | QGn4 | Morphological trait | Panicle/flower | RG143 | RG214 |
| Osa04LNT0283500.1 | 4 | nan | Morphological trait | Panicle/flower | RG620 | RG214 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
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