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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0284700.1

TTTAGACAATACGCATTCCAAATCATATTTATATATTTTCACGATGTAATCATGCATTACAAATAATCGTGCGAATAAACAAATAAGAGCAAATAGTTAGAGAAGCTGACAGCCTGCCTAACCACTATAGTAACCAAATACGAACACGAGCAGATAAGCAACAACTCGTCACGCGTCAACCGCCGCAGCCGCCGCCGCAGCCACCGCCCCCGCACCCGCCGCCGCCGCACCCGCCTCCGCCGGAGTCAACGGCCGAGGCGATGATGGCGCCGGTGGCGAGCCCCGCGGCGGCGCCGACGGCGAGCCCGGCTCCTGGGCCGAACCCGCTGCGGCCAGGCCTCCCGGCGTTCGCCGCCGGGTACGCGTACCCCGCGGGGGGCGGCTGCGCCGGGTAGCCGTACGCGCCGGCGGGAGGCGGCGGCGGGTACCCCTGGCCGTAGTAGTAGACGTCGTTCCTGTTCTTCCGCCGCTGCCTCTTGGCCCCGTCCGCGCAGCCGAACGCGGCGACGGCTGCCACGGCCACCGTTGCGGCGACGGCCAAGATCACCACCGCGGCCGGGCTGAGGGAGGCGGCGGCGCCTCTTCCAACGCCGGCGTGAAGGGCATGGAGAGCCACTCCCGCTCTCACCATGGCTTGCGCGCCCGATAAGAGAAGAGATGGAGCGAATGAATATGAATGCGTGTTTAAAAGAGAGATGAGGGTCCACGGATTTGGCATGATTGGCTCCTTTTGGTCAAAGTCTACCATATTTGATTATTGAGGAGTACTACTACTGTATTTTTTTTTAGGAGAGTAGTATACTATAACTAATATCCTCAGATATGTACGCGAATATTTAGTATTCAAATAAGTAAAACGACTCGTACAACTTGAGAACATCGTGCCCTCCAGCATCTCTCAACGTCAGGAAATTTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.887572
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0284700.1 osa-miR159f Cleavage 5.0 15.973 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0284700.1 4 brt4b Resistance or Tolerance Drought tolerance RM1153 RM348
Osa04LNT0284700.1 4 nan Morphological trait Root RM3276 RM3335
Osa04LNT0284700.1 4 np4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0284700.1 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0284700.1 4 np4 Morphological trait Seed RG143 RG214
Osa04LNT0284700.1 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0284700.1 4 nan Morphological trait Panicle/flower RG143 RG214
Osa04LNT0284700.1 4 nan Physiological trait Source activity RG143 RG329
Osa04LNT0284700.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0284700.1 4 nan Morphological trait Panicle/flower RG620 RG214
Osa04LNT0284700.1 4 QGn4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0284700.1 4 QGwp4 Physiological trait Source activity RG143 RG214
Osa04LNT0284700.1 4 rpf4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0284700.1 4 nan Morphological trait Root RG214 C1016
Osa04LNT0284700.1 4 gpps4.1 Resistance or Tolerance Drought tolerance RG214 RG620
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus