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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0285400.1

ACTATAATATATGAAGTTCATTATATATAGTTCAGAGTTGCAAACCATTGTACAAACGATTATATAAAGATATCTAAAATACATAAAACACAGCCGAAAAAATTCTTGTATACCTTTTCATGTTCTTTTATACACTATCGTATACTTGCACATGCAACTGTTCTGTAGAATGTAGGATGCAGGGGCACCAAAGAGAGAGAGAAAGAAAGGTGCAGTTTTCAGAGATGCAAAAATATACAAAATCGGGTTGAGATAGGCACCTCGAGTACTTTCTCTATTAGACCTTTTGTTTTGAACTAATCATCTAAATTCTTCATATATTCTTTTGACAGTTTCGAATTCATTATCAGTTCTTGCTCTTTCACCAGAGAGTCCCCAGATTCAATCAACGCATCTACAGTGGTCTTTGGAGGAATAAATGTTGGAAGCTCCTCTCCTTTCTTTCGCTTGAGAAGCTTTTCATTTAGTTGTTCATGACCACCAATCTCTTCTACCCACTGCAAGATTGCCCGATCGTATGTCCTGGATCTCAAAGCTCCATAAAAGTCCAGAGCTTGGTTTGGAAAAGTGTCTACAACTTTTGATACATCCTCGAAAGACAAACCATCCTTTATATACATGCGGTGAACAATGTTAATTATATCTTCACGGCCAGGCTGCCAATAGAACTTTTCCATCCTCCCATCACGAATCAAGGGAGCATACAGTGTCGAAAAATCATTTCCGGTAACTATTATTGGCACTCTGTGTGTTACATCAGATTCTCTCCATTTCTGGCCAATGCTAACCCTGGTTGGATTATCCGCCAAGTTCATTAAAGTTCCAATCACAATTTGATTATTTACTGTCATTTGTGTGTTACCAAATCTTCCAACACCAGCATCTAGGTCATTGATCATCAAAACACTCATTTTCCCTTGGTTTTGAATTACTTGAGAAGCCGTCCTGTATCGGTCACGTATAAGCCTCCCAGGTTCTCCTGCTTTCTCAGATTCTAGTTCTCCAGCAGACATAATAACAGGTTCAACACCCATTGCTCTAAATATAAGTTCAGTCTGGAATGTTTTCCCTTGGCCTTTTCCACCCCAGATTCCAAGTATAAGGGGAATCTTGATAGTAAGAATATGTGCAAGGTAGTTCTTCACAATATGACATGCTGCAAACATCAAGCAGTCCTTTTAGTATGTGTGCCTGATTATAACAATGTGCTTCCTCCTACATTAAATTGCTTACCAACTTTATCAAGGAAGAGGGGTGCGATGTAATAATCTCCTTGCAGGTACTCAAACGTCCTGGTCGCTTTCTGCCGGTAATCGAACACAATATCCGAGTCTTTGCCGAGGAAGTTGCCGACGAAGAGGTCGTCGACGATGCCGCTCCGCGCGCCGACGGCGATGTTCATGTTGTCGGCCTCCTTCCCGAGGCGGTAGAGGTAGTCATCCCCCTCGGAGTCCTTCGCCTCCCACGACGACTGCTTCGACAGCCTCCGCCCCTCCTCCTCCTCCTCCCCCTCATCACCGCCGGCGGTGGGCTGGGGAGACGACGGAGACGAGGACGACGCGCGGAGCACCGACGGGGAGCCGGGGCAGAGGCGGCCCCGGTTGGGGGCTCTCAGGATGGAGCTAGCGGCTGAGCGCGAGGGCGGGAGGCGGCGGTGCGCGGCGGAGGAGGCGAGGGAGGTGGCGGTGGCGGTGGCCATGGCGATTGCGGCTGAGAAATCGCCGGTGTGTGCGCGTCAGCGTGTGATCGGCGAGCGGC

Coding Potentia
Explanation CPC Score
noncoding -1.07287
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0285400.1 4 33576405 T G
Osa04LNT0285400.1 4 33575332 T A
Osa04LNT0285400.1 4 33575379 T C
Osa04LNT0285400.1 4 33576123 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0285400.1 osa-miR6246 Translation 5.0 11.403 1 23
Osa04LNT0285400.1 osa-miR408-3p Cleavage 5.0 18.778 1 21
Osa04LNT0285400.1 osa-miR5490 Translation 4.0 9.204 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0285400.1 4 gpps4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0285400.1 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0285400.1 4 np4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0285400.1 4 QGn4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0285400.1 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0285400.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0285400.1 4 np4 Morphological trait Seed RG143 RG214
Osa04LNT0285400.1 4 nan Morphological trait Panicle/flower RG143 RG214
Osa04LNT0285400.1 4 nan Physiological trait Source activity RG143 RG329
Osa04LNT0285400.1 4 nan Morphological trait Panicle/flower RG620 RG214
Osa04LNT0285400.1 4 QGwp4 Physiological trait Source activity RG143 RG214
Osa04LNT0285400.1 4 rpf4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0285400.1 4 nan Morphological trait Root RG214 C1016
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus