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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0286700.1

TGCATGTTCCTTCTGATTAGCATTATATTTGTTCCGAATAAGATTCCGATTAACAATGTAATATACCATTTGAACAATGGGAAACAAATATCTTCATCGAACTTATATTAACTCATCATATTGCATGATTAACACGATCAATCAACAGAAGAAAGCAATAAAAAATAAAAATAAAAATAAAAATGAGGCTCTGTTAGCCTTTATGAAGGAAGGGTAGGACATATATGCTTGATCAATGTTCTTGGGATGAAGAATTATTCACTTGGACTTCATTATTACTCGATCAGGCATCAGCGGCGCTCGGAGATGGAGCAGATTCACTGCTGGACTCTTCCGCTGGGCCTGGGGCCGCCGCAGGCCCAGCCGGGCTCTCAGCGGGCGCGTCGGAGGCCAACAATACCCTGGAGCCACCGGTGACTGTCGAGGCTTCCGCGAACGGTGCCACTGCGATAGCGGCGAGGAGGATCACGACGAGAACGAGCGCGCGAGCCATGGCCGATGTAGCTGTTGGTGCTCACCTACGTGCCTTCGATTTGGTGGTTGATGCGATGGGTTTGCTTCGCTTGGTGGGTGACTTGATGATGGGAGGGAAGGCTCACGCGGGGTGGATTTATACGTGAGGCGGTGGCTATTTTTGGGTAGCCCTACTGTGACGGTGTCCATTTTTAGATGCCTGACCAATACATTCGACGTGTGGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.876752
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0286700.1 osa-miR5543 Cleavage 5.0 12.088 1 21
Osa04LNT0286700.1 osa-miR2864.2 Cleavage 4.0 11.921 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0286700.1 4 rpf4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0286700.1 4 gpps4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0286700.1 4 np4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0286700.1 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0286700.1 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0286700.1 4 np4 Morphological trait Seed RG143 RG214
Osa04LNT0286700.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0286700.1 4 nan Morphological trait Panicle/flower RG143 RG214
Osa04LNT0286700.1 4 nan Physiological trait Source activity RG143 RG329
Osa04LNT0286700.1 4 QGwp4 Physiological trait Source activity RG143 RG214
Osa04LNT0286700.1 4 nan Morphological trait Panicle/flower RG620 RG214
Osa04LNT0286700.1 4 QGn4 Morphological trait Panicle/flower RG143 RG214
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus