>Osa04LNT0287300.1

GATTCAGAGAACAAGGTCTGTTGATATATAATTATTCTGTTTTTATTTGAATACACATAAACGATCAAACTGTGAAACGGTACAGGATCTGAGATAATTAGGAAACTACAGAGCAGCAGCTACAATATTAACCATAGCAGCTGCAGGATAAACACGGTGCTAAATAGGCAGGCTTTGTTCTTCTTTCACAGCCTGGATATCTGGAAGGGGACCATGACTTCAGTCATCTCCTCCCTCATGATAATCTTCCCAACCTGGAAAAGGTCGGAGATGCCTAGCTGCGTCGACAGATGCCTTCGGCAATCCTCTGCAGCAACAATGCCTGAAGAATAAGCTCCATGCACGGACCCAGAGTGATCGATGCAGGCGGCCTCCCCAGCGAAAAACAGGTTGCCCACCGGAGCACAGAATCTTTCATACAAGTCAGCTGGCTTCCCAACAAGGTCGCAGGAATAAGAACCAAGCGAATTCGGGTCGGTTCCCCACCTTGAAACCAAATACTGGACCGGTTCAGTAGCTCCTGGTAGCATTTTCTTGAGCTGAGACATGACAAAGTTTACGGATTCTTCATCGGATAGCTTCTCGAATTCATATGCGAATCTTCCTGCTACCATGCATACAAGAACCGGATGCCCTGTGGCTTTGTGAAGGTTAAGAAAGTAACCGCAGGCATTTGATGTTGGGGCAACCCTGCCTAGCACTTCTACATTTGGCCAAAATACACTATTGAAGCGGAGGGCTATTTTGTTCTCAATGCCAATACCAAGATCAGATATTGATGAAAGCTTCCAATCTGGGAGCTCAGGTTCAAACTTGATGATATTTGCTTTAAGTACACCAAGAGGGACAGTTATTATAGCAGCATCTGCAACAAAGCTTGTCCCATCTTCAACACATACTATAGTTTTGTTGTACCTCTGGATGATTTTGGTAACCCTGTGGTTCAGGTGGATATCAAGATCTTGCGCGAGAGCTTTGATAACAGGATCATAACCATGCACCATAAGCCCATGGCCACCAGTAAGAACATGTTCCTGATCCCAATTTTTCAGAGATATATTATCCACATCTGTGGCAAACCATGCCTCCAGCCTACATATGCACCACTGCAGTACTTCATATTGCAAACCATCAAGCTTTAGGTGTGGATTCCTGTCAAGCACAATTGAGATGGCTTGAATAAGAGGCATGTCATCTTCATGTTCAGCTCTTACTTTCACCGTCTCCTTAAGAATTTTCTCAAATGTTTCCCCGACTTTTGTCACTATCTCCTGGGGAACTTGACGACCATCCTTATCAAAGAGAGCATAGCTAAATGAACAAAAACAACAATTGTAAGAGAATGAAAGCCCATCAAGTTGAGGATAAACTTATGGGTTAGGAATAACTCCTAACCTCTCCAGATCATGGTCATATAGCACAGAGTTATCACCACTGGTGCGATATAATCTAAGGCCAAGCAACCTAATCAGTGGTGCCAATGAATTCTCATTGCATACACCATGCAACCAAGATGCTCCCATGTCAATTGGGCAGCCAAAAGAATAGTCAGTATGCACACGGCCACCAAGTCGGTCCCGTGACTCTAATAGTGTGACCTTAAACGAAGCATTAGACAGCGCACGAGCAGCTGCAATGCCTGAAATCCCTCCACCAATCACAATGACAGAAGGGGGAGAGGCATTTTGCCCATCAATGTGACGAAGAAAAAGACCTCCGGCGGCGAAGCCATTAGAAGGCTGGTCCATTATCCTCCCGATCCGAGTTGCGTTCGACGGCGACGAGGTGGAGAAGATCGAATCGAATCGAATCGAAGCAGAGAGAGAGAGCGGGATCAGAGAGTGTGGGGGAGAGGCGAGATCGGCTAACAATTAGAGGAGGAGATTAACGAGTGGTCGCGGCCACCACGTATAGGAAGCGAGAGGTAGAAGACGAAGATGAGGAGGCCGTCCATGGAGCCGCGGCGGGGGACGCTCGTGGTCGGCGCCGCATGGGTAACCCCTCTCATACCCAAACCAGCTCGTCGCCGGCGAGTCCCCTCGCCGCCGCCCTCCCCACACCGGCGTTCCCCTCCCTCGGCGCCACGCCGCCCCGCCGCCGCCGCCGCGCGAGCCGAGCCGAGCCGGTGCTAGTGGAGAGCGCGAGAGAGACACAGCGAGAGATTGGCTCGAGCCGGAGGGAAGCCGATG

Explanation	CPC Score
noncoding (weak)	-0.788238

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0287300.1	osa-miR5809	Translation	3.5	19.91	1	20
Osa04LNT0287300.1	osa-miR2873c	Cleavage	5.0	17.428	1	21
Osa04LNT0287300.1	osa-miR395t	Cleavage	5.0	16.151	1	21
Osa04LNT0287300.1	osa-miR395u	Cleavage	5.0	16.151	1	21
Osa04LNT0287300.1	osa-miR396a-3p	Cleavage	4.5	18.076	1	20
Osa04LNT0287300.1	osa-miR396b-3p	Cleavage	4.5	18.076	1	20
Osa04LNT0287300.1	osa-miR2869	Cleavage	4.0	24.156	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0287300.1	4	np4	Morphological trait	Panicle/flower	RG143	RG214
Osa04LNT0287300.1	4	tgwt4	Morphological trait	Seed	RG143	RG214
Osa04LNT0287300.1	4	np4	Morphological trait	Seed	RG143	RG214
Osa04LNT0287300.1	4	tgwt4	Morphological trait	Seed	RG143	RG214
Osa04LNT0287300.1	4	nan	Morphological trait	Panicle/flower	RG143	RG214
Osa04LNT0287300.1	4	nan	Physiological trait	Source activity	RG143	RG329
Osa04LNT0287300.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0287300.1	4	nan	Morphological trait	Panicle/flower	RG620	RG214
Osa04LNT0287300.1	4	QGn4	Morphological trait	Panicle/flower	RG143	RG214
Osa04LNT0287300.1	4	QGwp4	Physiological trait	Source activity	RG143	RG214
Osa04LNT0287300.1	4	nan	Resistance or Tolerance	Drought tolerance	RG143	RG620
Osa04LNT0287300.1	4	rpf4.1	Resistance or Tolerance	Drought tolerance	RG214	RG620
Osa04LNT0287300.1	4	gpps4.1	Resistance or Tolerance	Drought tolerance	RG214	RG620

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus