>Osa04LNT0287500.2

ACCAGCCATGACAAAGTTTACTGCCAGGGATGTGCAACGATTCACGTTCAAGTCGACAAGGTGACAGGTAACCTACAACAAACGAATCCATCCAACCGGTTTACACCACCTATAAGTTAAACGGACCGACCCATGGACCATGGTACGACGGTAAACGCTTTTTGGGCAGGACGGTGTATAACATTCACATCACATGTACAGCACTAGAGAACGGCCCAGCAAAAAGCAAAGAGCGATCAGCACAAGGGGCTGCAACATCTACCTGCCCTTCTCTCGAAGAGTTGATAGGGCGACGATGGTATCAGCTGCCCGAGCGACATTGCTGCTGCTAGCATCGTCTGGCCCAGACGATTGACTGTGCACTCCACTCTGTAAATGCTGGCCTTTTGACTCCTTAGGTATGGGTGTGGGAGCATTATACCCCTTGGTGACTGCATTAGGTGCTTGAGAGTGCTGGCTTTCTGAGACCATGCCTGCTATTGGAGATGCATCGTCCTTAGGCTCCTTACTTGATGCTGGAGGGTCATGGACATTCGGTGCAATACTCAGAGATAGAGAACCACGGGCCTCAGTGGCCAAAGCTTTAGGATTTCCATGCCCTGGTGCATGTACTGGACGTGCGGCACCTGATGTCCCATCATGGCCTTTACCTGAATTAAGAACTGGGCTTTGTTGTGATGAAATACTCAATGAAAGAAACTCCTTGTCTTTAGGTGTCACTCTTGGTGCAGAATTGAGACCTTCTGCACCTGCACATTTGGAATTTCCCAATGCCAAACTAGGAACAAAAGATTCACCGCCCTTTGGCCTGATACCGGGAGGTGTCACTCTTGGTGCAGAATTGAGACCTTCTGCACCTGCACATTTGGAATTCCCCAGTGCCAAACTAGGAGCAATAGATTCACCGCCCTTTGGCCTGATACCCGGAGGAGTCACTCTTGGTGCAGAATTGATACCTTCTGCACCTGCACATTTGGAATTTCCCAATGCCAAACTAGGAGCAATAGATTCACCGCCCTTTGGCCTGATACCCAGTGGAGTCACTCTTGGTGCAGAATTGATACCTTCTGCTCCTGCACATTTGGAATTTCCCAATGCCAAACCATGAACAAGAGATTCACCGCCCTTTGGCCTAATACCCGGAGGTGTCGCTCTTGGTGCAGAATTGAGACCTTCTACACCTGCATATTTGGAATTTCCTAATGCCAAACTAGGAACAAGAGATTCACCACCCTTTGGCCTGATACCCGGAGCAAAAATCCCACAACTTTTAGAGGCATTATTTGGTTCTGTAGAAGCACGACCTGAAGGTCCTGTGCTTGGTCTAACAGAATTGCAAACTTGCGCTGCGAGAGATGCTGATTTTCCAGATGGCATCCTTAAAAGGCCATTATGAGCTACAGGTGCCACTCTTGATACCAATGGATCTTGCCTTTTGGCACAATCAGTAGCAATGTTTCCTGATAAAACGGTTTGTATAGGAGAATCCCTCACTTTGGGTTCCACACTTGGAGAAGCCCCATGTACGGGGCCGACAGAAGTAGAAGTTTCCGGCACACCTTTTGGTGCCAGAGAATCATAGCCCTTGGAAATCATGCCTGTTGCAGGAGTATCACATCCTTTGGTGCAAAGACTGGTGCTGTTTTCAGCTACTGCATTTGGGGCATGAGAATCACCATGCGCAACACTAACAATTAATGAACAATTCCCAGTTTGATCCAAAGACCTGTCTTCTGCAGCTGTCCTCGCAGGATCAGAAGATGCTATTTTGCCAGCAGATTTATACCATAATGATGGACAGTAATGAAGCCTCTTCAAGGTTTCCAAAAGCAACTTCTCTCCAACTAATATTATCATTTGCTTTACCATCTCCTCACGAGTTATTTTGTTTTCCTTCAGCTCTTCATAATGATGGAAGAGCAATTCCCTTGCTACCGATGATATATTTTCTTGAATCATGGCAAAAAGAACTCTGAAGGATATCCAAGGGGAAGTTGGTCCCTCAGCATTTCCACTCATTATAGGTACAAGAGTAGAAATATCCACCGCAACTTCCTTTGGTGATGGGTGAAACCATAAACCCTTCAAACCAAGTAAATAATTTCGAACTTTCGAGGAAAGCCTGAAACTAACAAGATATTCTAAACGAATATGGGTGCTAAGATGAGATGGCCACATGACGTAGCACTTTGGATTTGAGCAATCATCAACACCAGAATCATATATGTCACTGCTTGGAAAAGAATCTTGTGATCCAGGCATGACAGCCTCCATGTTCCCCAAAATCAACCGGCAGAGCAACATATATTGCACTCCTTTTTCGTCAACATCACAAAGACCAACACTGGAAAATGCTCGGTCTTCTGGTGAAAGATAAACACCAGCACTCAAGCCTGCCTTCTCAGCAGGTTTTCCATTGTTACCAAAACCATTAATTAGGATCCTAACTATGTCATTCTTCCTAGATCCCAGCCATCCATACCTTACATTTGCATCACCACGTTCTTCCTTGGTGGACATCATTTGTTTTTCAAAAGCTTGAAGTCTACACTGTGCAGTGATATCATTCGGAGAGTAGCGGTGGATGTGCAGTATATTATTTGGCGTTGCAAATGGACCCATGCCAGAGAGGAAAAGGTCCTGCGCAAAAAGAAAGCCTTCACTGCCTCGTTCCACAGATGCGATCTTTTTGCGTAATATGTCTGCAGTGGCAGGCTTCTGTGGAACTGGAGGACTAGATTCAAGGACAACTTGCTTCACCACTTCTGGTGGAGAATTTGCAACCTTATCCAACATTATTCCCTGTGTGGCGCCCTCAAAATCACCGCCTACTTTAGCCACTTCATCAGCTTCCTCATCAAAGAATAGAGAAGGATAAAAGCACTTCCCAGTGTCATCAAACCATGCCACAGACCGCTGCTTTCTAGATTTTAGGTTGACCAGGGTCATCGACAAGAAATCAACAAGAACAGGCTCATCGTCCATCACAGCAACAACACTAGATTTATTGCTTCTAAATTCTTCAATGAGAGACTTCATTATCTGCTCAGGAAAATTGTGCCAAGAACCCTGTTTGTAAAACATAACACGGCTGGGCACTCCACTTTTTAGGTAATTGACACAATCACTGGCAAGGTTAGGTCGAGTGCAACAGCATTTGCAGCGCTTGGCAGATGAATCAGATGATGGTCCCTTCTCAGTTTTGATGCGACGAGACTTGCACTCTTTTGACAGGCAGTCATCAACAAGCTTGCGCTTCAAGCACAAGGAATTGGATTCTTGTGGTGATGCCATGGGATAGCTCAGTTCCAGGCCGACGGTCTTCCGAAACACCGGCGAGGCGACGTCGAGGCCCCCCAGAGAGCGGAGACGCACGCCCCCGTCGCCTGACTGAACGGCGCGGCGCTTGTTGTCCCGATCCCGGTGAGAGACGGCGCCGGCGGCTGTGGCGGCGCGGCGAGGTAGCGAGGTAGCGACGGGGAGCCGGGGAATCGAGCGAGCGAGCAGGCGGTGGCGGTGGCGGTGGCGGTGGCGCTAGGGCTAGGGCTAGGTCGCGACGCCACACTCCACCAGCATCGC

Explanation	CPC Score
noncoding (weak)	-0.346348

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0287500.2	4	34315887	A	G
Osa04LNT0287500.2	4	34319394	T	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0287500.2	osa-miR5541	Cleavage	4.5	21.021	1	21
Osa04LNT0287500.2	osa-miR5541	Cleavage	5.0	22.233	1	21
Osa04LNT0287500.2	osa-miR5790	Translation	4.0	22.493	1	24
Osa04LNT0287500.2	osa-miR5512b	Translation	4.5	20.759	1	21
Osa04LNT0287500.2	osa-miR5512b	Cleavage	4.5	9.175	1	21
Osa04LNT0287500.2	osa-miR6254	Translation	3.5	11.008	1	21
Osa04LNT0287500.2	osa-miR6254	Translation	5.0	23.781	1	21
Osa04LNT0287500.2	osa-miR7693-3p	Cleavage	4.0	14.611	1	22
Osa04LNT0287500.2	osa-miR166a-5p	Cleavage	5.0	15.959	1	21
Osa04LNT0287500.2	osa-miR166e-5p	Cleavage	5.0	15.959	1	21
Osa04LNT0287500.2	osa-miR160f-3p	Translation	5.0	16.624	1	21
Osa04LNT0287500.2	osa-miR166l-5p	Cleavage	4.0	15.959	1	21
Osa04LNT0287500.2	osa-miR172a	Translation	5.0	17.733	1	21
Osa04LNT0287500.2	osa-miR172b	Translation	4.0	17.733	1	21
Osa04LNT0287500.2	osa-miR172d-3p	Translation	5.0	17.733	1	21
Osa04LNT0287500.2	osa-miR820a	Cleavage	5.0	22.199	1	21
Osa04LNT0287500.2	osa-miR820b	Cleavage	5.0	22.199	1	21
Osa04LNT0287500.2	osa-miR820c	Cleavage	5.0	22.199	1	21
Osa04LNT0287500.2	osa-miR1425-3p	Translation	5.0	15.91	1	21
Osa04LNT0287500.2	osa-miR1429-3p	Cleavage	5.0	12.46	1	21
Osa04LNT0287500.2	osa-miR2105	Cleavage	5.0	22.508	1	20
Osa04LNT0287500.2	osa-miR395x	Translation	4.0	9.901	1	21
Osa04LNT0287500.2	osa-miR5494	Cleavage	3.5	9.142	1	21
Osa04LNT0287500.2	osa-miR5512a	Translation	4.5	20.759	1	21
Osa04LNT0287500.2	osa-miR5512a	Cleavage	4.5	9.175	1	21
Osa04LNT0287500.2	osa-miR2275c	Cleavage	2.5	17.912	1	23
Osa04LNT0287500.2	osa-miR5514	Cleavage	4.0	18.809	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0287500.2	4	gpps4.1	Resistance or Tolerance	Drought tolerance	RG214	RG620
Osa04LNT0287500.2	4	rpf4.1	Resistance or Tolerance	Drought tolerance	RG214	RG620
Osa04LNT0287500.2	4	nan	Morphological trait	Panicle/flower	RG620	RG214
Osa04LNT0287500.2	4	nan	Resistance or Tolerance	Drought tolerance	RG143	RG620

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus