>Osa04LNT0288000.2

ACAAGGATGAATAGCGGAGCATGAATTTTACCGTTGAACACAACCACACAGACACAGGAGCAGATTAATTTACATTGTTCTTTGAACAATGGCGCCACAATTTAGACGCAGATGGCCTCTCGCACAACTAAAAAAGGGCACGACTAAAAAAGGTCCCGCAAATTCAAACCATATCAGGAAACAGATAAAAGCATGTGATATCAGGTTTGGTTAGAGTCTGTACAAATGTGGCATATCAGGCTATCAGCAGCTACTTTGTCATGTAAGGTATCCGGTGGCCACCATGAGCAGCTCGGGCATCGCAAGCCATTGCAAGATACCTCAAATTGATTTAATGGCGTATCAAGCCAGCCGTGTCGAACCTTGTAAAATTAACAGAGCCAGCCATGTCGAACCTTATAAAATTAACAGCGCCCTGTGAGCTATCAGCCGATGAATAAGTTGTCTCTTTTGACAATAATCATGTCAAGTCCCGTACAGAAGCCTCACAGATTTTCCAAGATCCATCACTCTGTCTCCTCAATATGTACTGAACTTCATACATACTGTAATAGCTAGGCTTCTTGGGCTGGGATTCATCAACAAGCTCAGCCGCTTCCTCAAGAACAGCACCAATTTCTGCAACTTCACCAGTGCCAGACTCATCCAATAGTATCTCCGCTCGAACAACAGAGAGATTTAACAAAACAAATCTCCAATAGCAGGACTGATCCTTTGCTGACAATGCCAACTCTTGCCACTTCGAAAGCATTGAACCGTCAAGAATTTCAGGGAGCATATCAATTTGATAATCAGGGCCAAGAGCTTCAGATTTGATGTCTTGCCACTGCTTCACAAGTGTTTCTGCTTCTTGAAGAGCCATACTTTGCTTGCATACTGTAGCAGCCACTGCATTAGCAACAGAAGATAGGTCGCTTTCTTCGCTTCTTGAATAAAGCCTATTGTTTAACCAAAGCATCTTGGGCAGTTTTTCAAAATGTTTCCTGACGCTGCTAGTAATAAAAGAACCTTCCAACGTCGATTCTTCATTCAGGGACTGTGTGGCAGCAGAACCCCTACTTGCGGAGGCAGGTTTCATGTGACCAAACTGAAGTCTGAGCAGTTTTAATGTACCAAATAGGGCAAACCCAATGAGTGCACTATATGCAAGTTTCCCTACAATATCACCAGTAAGACCCCACGATTCCAAGGTTCTTGCAGGATGCGATACAAGATTGCGCTTCAGGGGAACAGATGTTGTGGTTGAACCATTTGCTGGCCTATCCATTGAAGAATGGACCCCCAGGTTGTTTGGTGCAAGTTGCTTTACAGCTTCCCCCAAATGGCTGGTAGAATTTAATCTTGGCGTCTGCTCCCCTAAAGCTCTGTTGCATGGTGACACACTAGAAGATGGCTGAGAACTCAAACGGACCATTCTTGTGGCTCCTAATTTCTGCTTGGAAGTGCTAAGGATGCGCTTAGGAGCCCCAAAGAAGTTGGCCAGAGACTGACAGACAGTAACCTTGTCATTGCCGTCTTTCTTTTTAGGTAACCCATAATTTCTTGAGTTGGAATTCCCATTACTTTGAAGCTGCTGAAGCTTTTCAAAAACAGTGGTGCCAGATTCCTCTCCAAGGAGATACAAACAAAATGATTCCTCAAATTTCAGGTCTGTGTTTTCAGATGCAACTAAACAATCGCAAATGGTTTTGGCTTTACTGATCAGGTCAGCCTGCCGGGTTGAAAACCCTAACGCAAAGTGAGCAAGCATCGCTACATGGAAACAATTGAAGTCAACTACTGCCCGCTGGCTCTGGGATTCCAACGATTTTTTGTTTTTACGAGTTGTAGCCAAAGTATCCCAAGAAAGTAGATCCACAATTTCAGTGGCTAACAACTTATTCATTGCTTGGCCCAAGAAACAAGGCCAATCATGAACTCTACAAGAGGATTCAACGTCAAGACCCTGTCTAAGCAGTTCACAGAGAGCTGCAATAGCACCCTGCCTGCGTTCAGCGTTTTCAGGTGTCTGAGGTAAGCTTAGAAGCTCCAGAGTGCAAGCAGGTGCAAGCTCTTCAAGTGATTCTTCAATCTGTTCAAGAAGGGGCAACTTCTCCAAAGACGGTTTTCTCCTCAACAGGTATTGAGCACGTGCTAGAGCTTCAAAGCCAAGAGACACTTTACTTTTCTCAAAGCTAGCTTTTGCAATAGAACATTCAGCTAGTGCCATTGCAAGAAGCACATCATGAACATATGGCCTAGAATCTGGGCGTCGTAGAGCCGCCTGACCAATTTCCAAAACTAGCTTCTCTTCTCCAACCTGCATCCCCTGCATTTTACGCTACCCAGTCCTAAGAAAGGGCAAAGTTTAAAACCTACGCGCTCCTCACCACATTCCTAAGGATAATTTAC

Explanation	CPC Score
noncoding	-1.26389

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0288000.2	4	34511277	G	C
Osa04LNT0288000.2	4	34511426	G	C
Osa04LNT0288000.2	4	34511632	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0288000.2	osa-miR5794	Cleavage	4.5	18.245	1	21
Osa04LNT0288000.2	osa-miR5825	Translation	4.5	21.625	1	24
Osa04LNT0288000.2	osa-miR5834	Cleavage	5.0	14.511	1	21
Osa04LNT0288000.2	osa-miR5079b	Cleavage	4.0	16.142	1	22
Osa04LNT0288000.2	osa-miR395o	Cleavage	5.0	17.678	1	21
Osa04LNT0288000.2	osa-miR1428a-5p	Cleavage	5.0	13.416	1	21
Osa04LNT0288000.2	osa-miR1871	Translation	5.0	21.644	1	24
Osa04LNT0288000.2	osa-miR2055	Cleavage	4.0	8.043	1	21
Osa04LNT0288000.2	osa-miR2866	Cleavage	5.0	20.348	1	20
Osa04LNT0288000.2	osa-miR2877	Translation	5.0	22.857	1	24
Osa04LNT0288000.2	osa-miR5079a	Cleavage	4.0	16.142	1	22
Osa04LNT0288000.2	osa-miR5145	Translation	3.0	21.631	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0288000.2	4	nan	Morphological trait	Panicle/flower	RG620	RG214
Osa04LNT0288000.2	4	nan	Resistance or Tolerance	Drought tolerance	RG143	RG620
Osa04LNT0288000.2	4	rpf4.1	Resistance or Tolerance	Drought tolerance	RG214	RG620
Osa04LNT0288000.2	4	gpps4.1	Resistance or Tolerance	Drought tolerance	RG214	RG620

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus