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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0288300.1

GGATCAGACAGCTCGACGGACTACAAAACATTCAACTGTGTTTTTGTCAGTGACGGAATCACGCCATCATCTGTTTCTGAAGCACTGTAAAATACAACATTCTTCCCATAACATCAAGGGGCTGTAAGGGTCAGTTGCATGCTACTCAAATAGTTGTGCATGTTTAGGCAATCAAAAGAAGCCATTCAATATTGCTACCTAGAAAAAAAAAAGAAGGGTATCATTTCCTCATGTCGAGCTAAACCTTCAGGCCGAAGCATGGTGATAGCTCCATCCAAAGGTTCATCGTCAGAAAATTTTCATTTGTTAGCCTTATCTAAAATCCGCAAACTCCATGAATCACTACTTTGAGGTAAGGTATGTTCAGAATAGTTTATGCCATGTTGGTACTGGTTTCTTAGTAAAGGCAGCCTTGCAGGCACAGAGGGGTCGTCGTCGCTATCATAGTCACTTTCACGGTCAGGTCCAAGAGCCCTAAGTACCATTCCAAGAACGATTGACAACACCTGGGCAGCGACAACCGAGAGGCCTATCCATTCACAAATCTCAAAATTTGATCTTATAAAATCCTTGAATTCTTCAAACTTTCCAGATGGGTCATCAGGGAAATCCTCCTCCCAGTTGCTATTCAGAAATACGTCAGTGGTGATTGCTCCTTCCAATATAATAATAATAAACACAAAAATCATGTACTGAATGTCAGGTTAAGGCAAAATAGTCCTTGCATCACCAGGTTGAGTTACATGTAAGGTTGGAGGCTTAAATGGATCAAGAGTTGCCCCGCAAATAAAAGGGAATAGAAGTTTGCACTGTCATTTCAGAAATGATCTGCTCATGTTAAAAAGAAAGATCTGCTCAACCGAAATTTTTTTTTGTGGCATTTCAATTATATAAACCAGTAAAAAAACATAGTTCTGTACTATAGAACATATCCGGTCAACGAACACGCAGGTAACTTCACTTTATTAACTAAAAACATAAAAGTGTAAAGTTAGGCACCAAAACAACTCCATAAACCAAGCTGCTTGAAGGATACACAAGAGAGACAGTGGCTGTTTGCAGTTTCAGCTGCAATATGACCAGAGCAAGTCAACAAGCACATAAAGACTCCCAGGCCAATAAAAGTGTAGATAAACCATGGGACCGGGAGGCGGTAGTGGAGGTCGGCGACGTCCCTGTACCATGCGCGGAGCATCCAGAGCGCGTAGAGGATGACGGCCATCCCGGCGAGCCCCAGCACGGAGTTCACCGCCTTGAGCCCCGTCTGCACGCAGCTCCGCACCACCCTCCCCGCCATGGCCGCGCCCCACCCGCGTCTCTCACCACCAACTCCGGCTACTCCTCAGCTCGGTCTGCACCCCCACCCCACCTGTGCAGCTGTTCTCCGCGCAGCCTCGCGTGGGAGCAAAGAATGGGAATGGGAGACCGCTGCTGCTGCTGCTGATGGCGGAGGTTGACGGCGGCGGTGGCGTGGAATATTGGGGAAGAGGAGGGGACGTGTGGAGGTGGGAGGGAAAGAGGAGGCGATGGATGGAT

Coding Potentia
Explanation CPC Score
noncoding -1.01415
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0288300.1 4 34720413 T A
Osa04LNT0288300.1 4 34719371 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0288300.1 osa-miR166c-5p Translation 4.5 15.418 1 20
Osa04LNT0288300.1 osa-miR1854-3p Translation 5.0 12.275 1 22
Osa04LNT0288300.1 osa-miR1865-5p Cleavage 5.0 18.601 1 24
Osa04LNT0288300.1 osa-miR5146 Translation 5.0 20.465 1 24
Osa04LNT0288300.1 osa-miR5158 Cleavage 5.0 17.4 1 24
Osa04LNT0288300.1 osa-miR2275d Cleavage 4.5 19.097 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0288300.1 4 nan Morphological trait Panicle/flower RG620 RG214
Osa04LNT0288300.1 4 Sh(t) Morphological trait Panicle/flower nan nan
Osa04LNT0288300.1 4 nan Resistance or Tolerance Drought tolerance RG143 RG620
Osa04LNT0288300.1 4 rpf4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0288300.1 4 Sh3 Morphological trait Panicle/flower nan nan
Osa04LNT0288300.1 4 iSh3(t) Morphological trait Panicle/flower nan nan
Osa04LNT0288300.1 4 Sh3-gla Morphological trait Panicle/flower nan nan
Osa04LNT0288300.1 4 gpps4.1 Resistance or Tolerance Drought tolerance RG214 RG620
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus