>Osa04LNT0288500.1

GACGGATAATAGCTATGGAGGTCAGAAATGCAATAATCATTACTACTGTCATCACCACTGTAGCAGCATGAAGGTGGCTTATTTCCTAGTAAAAGAATGAACAATCAGGCAACATGAAGCTGGATATTGTAAAAAGTCAAAAAATTGGATATACTCACCCGCCCAGTTATGTGGACATATGGATCACTTTCGCCAATTACAACTGTTAAGGGATCATTGCCTAACCAGCCAGCTTTAATATAAAAAAACATGGTAACAGAGATTACTAGAGCATTGAAAACCACTACAGTTATCCATGGCGTGGCAACAACAAAATAACGAATCAGAAGCAACCAGATAACTGACAAGAAAAGAGGGAGCAGTCCACCGCAAACAATTAACACAGGCCATGACTTCCCAATGTCAGCAAC

Explanation	CPC Score
noncoding	-1.19366

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0288500.1	4	34782770	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0288500.1	osa-miR1863a	Cleavage	4.5	13.605	1	24
Osa04LNT0288500.1	osa-miR2275a	Translation	4.0	13.939	1	22
Osa04LNT0288500.1	osa-miR2275b	Translation	4.0	13.939	1	22
Osa04LNT0288500.1	osa-miR1863b	Cleavage	4.5	13.605	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0288500.1	4	nan	Morphological trait	Panicle/flower	RG620	RG214
Osa04LNT0288500.1	4	Sh(t)	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0288500.1	4	nan	Resistance or Tolerance	Drought tolerance	RG143	RG620
Osa04LNT0288500.1	4	rpf4.1	Resistance or Tolerance	Drought tolerance	RG214	RG620
Osa04LNT0288500.1	4	Sh3	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0288500.1	4	iSh3(t)	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0288500.1	4	Sh3-gla	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0288500.1	4	gpps4.1	Resistance or Tolerance	Drought tolerance	RG214	RG620

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus