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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0289300.1

GCAGAACAGAGAACTTACATGGAGTACTGAATGGCGTCACGAGCAGTGTTGGCAGGCAAGAATGCATCAACAGCAACCTCCTTGTTCTCATTCTTCTTGATACAGTCTTCAAAGAAGCGTTTAATCTCTTGGAGGCGGTGAGGAGACAGCTCACTGATGTCATTGTAATGACGGTATTCAGGATCATCAGCACATACTGCTATTATCTTGTCATCCTTCTCACCCTGGTCAATCATGGGCATAAGGCCAATTGCTCTAGCACGGAGGAAGGAACCAGGAATAACAGGCTCCTGTGTGGATTAAAAGAACACATTACCACGAGATAATGGCACAATATATTCCACACTGTAGTAAAAAAGAGAATGGTTTTGAGGTGCAACTAAAAAACTACTGGTGCTTGTTCAAAAGTGTCAATGCCAAAGGACTTGCAGGCTGATCCCCTGCTCTCAGACACTATCAGTTAATAATGCAAAGGACTGTTTTGCATGTTTAAAAGAAAAGAAGCACAATGGAGTTACCTGCATCAGGACCAGAACATCCATTGGATCATTGTCTTCACAAAGTGTCCTTGGAATGAAACCATAATTATGGGGATACACAACTGATGAGTATAGGACACGGTCG

Coding Potentia
Explanation CPC Score
noncoding -1.20588
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0289300.1 4 35121230 A G
Osa04LNT0289300.1 4 35121259 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0289300.1 osa-miR5794 Cleavage 4.5 16.855 1 21
Osa04LNT0289300.1 osa-miR440 Cleavage 5.0 14.811 1 24
Osa04LNT0289300.1 osa-miR1861d Translation 3.5 17.367 1 22
Osa04LNT0289300.1 osa-miR1861h Translation 4.5 17.367 1 22
Osa04LNT0289300.1 osa-miR1861j Translation 4.5 17.367 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0289300.1 4 nan Morphological trait Panicle/flower RG620 RG214
Osa04LNT0289300.1 4 Sh(t) Morphological trait Panicle/flower nan nan
Osa04LNT0289300.1 4 nan Resistance or Tolerance Drought tolerance RG143 RG620
Osa04LNT0289300.1 4 rpf4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0289300.1 4 Sh3 Morphological trait Panicle/flower nan nan
Osa04LNT0289300.1 4 iSh3(t) Morphological trait Panicle/flower nan nan
Osa04LNT0289300.1 4 Sh3-gla Morphological trait Panicle/flower nan nan
Osa04LNT0289300.1 4 gpps4.1 Resistance or Tolerance Drought tolerance RG214 RG620
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus