\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa04LNT0289700.1

ACTGTAACACCAATAACAAACTTTTCCTTTTTCTTGTGGTCATGCATATACATCTGACATATTTAATTCGAAAAATTCAGAAGCAATATATATAGAGATGGGTATACACAAAGATGCCATATCTATCACTGCACAGCGGATGTGGATAGTATAAGACCGAAACCTACTTTCTCACCATGATCTCCATCCTCATGAGGAGCGTATACTGTGGGTCCGTGATGCCCAAACTCCAAAAACCAGGAACCAAAACACAAACAAGATCGCCCAACATCGCATAGATCCATATTGGATCCTTGGGAAAACAAATCTCAGGGAGATTATTATAGTCAACGCACATAAACCTCCAAGAAGCATGTGAAGACAAATCACAGCAGCTTTCTGCAAAGAAATTAAAACAAAACCATTCTTCTCAGTGATGTTTGATCCATGGAAGATTCTTAATTGCAAATTGTGTGAGATGAGAGGGTGTTAATTAGTTGACAATAATGCATAGAGAAAGACTGAGAAATGAAAGAAATTTGCATGTGACACATAATATTCCATGGATAATTGAACACGATGAGAACGCAACCTGATGGTATTATAAGGCACAGCTGCATCTATTTTTCTACTTAAGCCTGTCTACCTTATATCTCTAAAAATCGATCAAGAGCATTTGCCATACAATGTTTGGATAAAGACCACAAACATGATCTGTTGCATTGTGCTAGCCGGTACCAAACTTTCATAAGAGAAGGACGTGAGACATATCATCAGATACACGGTGTGTATTAGTTAGGACAAAGCAGTAACAGGCAATAGATATTTAAGCCGCACACCACTTTCGGAAGATAAATGGACATTAAGATATGAATTATAAGATGGAGCTTTATGCATCAAAGTATTCTTTTTTGCATTATGACTTCTTAAAACTGACTCTGCAACTAAATGTGTAACTGTGCTGAACATAGACTTAAGGGGGTCTGTGCTTGCAAGATAATAAATTTCAAGAGATTCGAATGATCCTAACATAAAGTGTCAAAAAGTGTGGAATCAAGTTGTAGTTTCCAAATGACAGAGGTCACAGGTAAGAACAAAGCAGTTTGGAGATCAAACTTACCTTACCAACATGTGGAGCAACTAACCATGCAAGAACAATAACACCTAGGCCAATGGCAAGAAACACTCCAGTACCCTCCAAACTCCATCTTGTGTGTACTACTGTTGTTACCACAGCACCATGGTGTATAGAATTATTACTTGGACTAGCAGGTGTTTGTTCGGTTTGGCCCTGAGAAATAGCGAGGTGTGAATTTTGAGGGTTGAACCATGAGGATATCTCGGAGAGGCGCTGTCTGCGTATCGCGGCGACAGCGTCTGGATCGACACCTGAATCTGCCCCATAATGCAAGTAAGAGAGGTCTCCAGTGGAAGTCCTTTCCCTGAGAGCTTCATATTCCTTCAAGGAGGCAAGGACCTTATTGAAATCCGCAGGCCTTACATTTACAGCGACATGTCCGCAAATCTCGCATACAGTAGAACCATGGGTGATGAACCACTTGAGTGCGCAGGCGTAATGCGCAAGAGCAAGGTCGTTCTTGCAGGAGCATCCTAGATCCATGAGATGGTGGTGGTGATGCAGAGGGCCTGATTCCAGGTCGGTGGTGGCGGCGGTGCAGACAAAAATCTCGCCGCGGGGGCTTACGAACTCGAGGACATTGTTGTTGGTGGCGGTGGCGGTAGCAACATCATCTGCATCTTCATCTGGAGAAGAAGGCGGCGGTAGAATGCCTAAGAAAGCAAGGGCGGAGTGTCCTCTGAGATCAGGCTCGACACAGTGACAGACTCGGCAAAGTCTGTCGGTGCTATCATCTGCATCTGCAACTGAGCCTGAGGACGGCGGGTCGTCCTCCACCTTGAGCCCCATCTCATCTTTATCTATCCATCTGACCGCGTGATCATCTCATCTCCCGGTGCCCTTGTCCTAGTAATCTATCTGATGAATCTACACCGAGCGAATCAAGCGTCTAGAGAGAGGAGGGAGGGATAGGGCAAGCCCAAACGAACCTCGTCTCAAGTAAAGGATTGATGGTGCGACTGCGAGCGAGGGCGATCCGAGAAGCGGAAGCAAGGCACCTCGGTGGATGATGAGTCAGATCGAATCGCGATTTGCTTGCTCCTTGTGCGATCGAGTTGCGAGCAAGACGATGGATGGACTCGAC

Coding Potentia
Explanation CPC Score
noncoding -1.26785
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0289700.1 4 35431607 T A
Osa04LNT0289700.1 4 35431615 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0289700.1 osa-miR5830 Translation 4.0 20.548 1 24
Osa04LNT0289700.1 osa-miR5830 Cleavage 5.0 13.25 1 24
Osa04LNT0289700.1 osa-miR395u Cleavage 4.5 21.865 1 21
Osa04LNT0289700.1 osa-miR530-3p Translation 5.0 22.675 1 21
Osa04LNT0289700.1 osa-miR530-3p Cleavage 5.0 15.249 1 21
Osa04LNT0289700.1 osa-miR535-5p Cleavage 5.0 8.479 1 21
Osa04LNT0289700.1 osa-miR5492 Cleavage 4.5 15.001 1 21
Osa04LNT0289700.1 osa-miR5505 Cleavage 4.0 18.11 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus