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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0289800.3

CAAACTTCCAATTTTTTCATCACATCAAAACTTTTCTACACACACAAACTTCCAACTTTTCTGTCACATCGTTCCAATTTCAACCAAACTTCCAACTCAAGCGTCCAGATGGCTCAGTACTTAAAAGTACAACAGTATCCCCAATTTCACCATGGTCATCCCAGAATGGGATCAGGAACAAGCACACGCACATATATTCTTCATGTTCAATGATCTTAATTCTCAAACCAATAGACCAAAAAAAGGGCGAAAGATTTTAACGGGAGCAATTCTGAATATGGGTATCCCTAGAGGACCATGTCCAACGTAAATGGCGCACCGCCTAGATCTCCTCCTCTTCAAAAGGGTCCCTCTCTGGGTAGTCCCCGACCTTTACTTTCTCTGGCCTAACAATAGCTCCATGCCCTTGAGGACACTCGAAAAAGCGAATGCCTTTCACCATGCCATCATGCTTTCCAAGTGGTTCATCATATTGGACTCCAACCCAAAATCCACGTCCAAGAGCTTCAGCTCTGCCAACAAATTTTACAGTACCCCTCTTAGCACCTGGCTCGACTTCACATCTATCACCCACCTTGATGTTGGCGCACAATTCCTCCATATGCTTGTCAGATTGTTGTTGTTTATCATCTGACGTAGGGTTTTTAAAGGCCATCTTTTCTTTGAATTTTCGAAAGTTTGTATCAAGATTATTATATGCTTCATCTGAGATGGTGTACTTTTCAACAAGGGAAGTATCCTCCAACCAACCACCAGAGGTGATTGACGAAGGATCGAGATCGATAATGTGCAGACGGTACCCGTCGTATGGGGAGTAGGAGGCGAGGGTGGCGTCATCGTGGTCGAGGTCGGCGATCATGGCGCCGGTGTCGTCGCGGAGCTGGAGGCGCATGAAGGCAACGGATGTGCCGGTCTTCCTCCAGAGCTTGTCCTTGAGCGCCTCGACGGAGGTCTGACCTGCTTGGAGACGCGGATGTCGGAGGAGAAGGTGGAGAGGTTGGAGTGCGTGAGGAGGAGGAGGACGCTGTCGTCAGCCGGGAGATGCAGCTTGGACGAGGACGACGACATTATTACCGGAGATGGCCGCCGCCGCCGATCGGAGCTGAGCTGAGCTGCCTGCCGCCGGCAGCAGCACATTTCCTTTTGTTTTGGTGGATATTTTCCTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.818036
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0289800.3 4 35423106 T C
Osa04LNT0289800.3 4 35423128 T C
Osa04LNT0289800.3 4 35424187 A C
Osa04LNT0289800.3 4 35424321 T C
Osa04LNT0289800.3 4 35425876 C A
Osa04LNT0289800.3 4 35425924 T C
Osa04LNT0289800.3 4 35426055 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0289800.3 osa-miR5083 Translation 5.0 14.226 1 20
Osa04LNT0289800.3 osa-miR5523 Translation 5.0 16.782 1 22
Osa04LNT0289800.3 osa-miR1850.1 Cleavage 4.0 3.076 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus