Transcript

Sequence

>Osa04LNT0290000.1

CATATTTGCAAAAAAAAATTGAATAAAACGAATGGTCAAACGTTGGTCGAAAAATCAACGGTGTCATACATTAAAATACGGAAGGAGTATAACATAGGGGTACACAAACATAATGATACGATATATATATATATATTTTGCAGCAAGCAGATGATGGATAGATGGATGGATGGGTTAGGCGGTAGATTCCTTGAGGTAGGCGATGAGGTCGGTGCGCTCCTGCGGCTTCTTCAGGCCGGGGAACACCATCTTGGTGCCCGGAATGTACTTCTTAGGGTTGAGCAGGTAGTCGTAGAGGGTGCCTTCCTCCCAGACGACGGCCATGTTCTTGTTGGCGGTGGAGTAGGCGTAGCCGGGGGTGGTGCCGGACTGGCGGCCGAAGAGGCCATGAAGGTTGGGACCCTGCTTGTGCGCGCCCCCGCGCTCCACCGTGTGGCACTGCGCGCACTTGGTCCGGAAGATCTTCTTGCCGCTCGCCGCGTTTCCAACGGGGGCCACGCCGAAAGAAGCCATCTAGCTAGCTCGTCGATCTCTCTCTCTCTCTCTCTCCTTCTCTCCAGCTACCTCTTTAATTATTTTGCTGGCTATTCGTCTCTTGTTCGATCTCCCTCCGCTGTGCTCTCCAGCGATC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.750255

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0290000.1	4	35481635	C	T
Osa04LNT0290000.1	4	35481641	C	T

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0290000.1	osa-miR6250	Cleavage	5.0	9.574	1	22
Osa04LNT0290000.1	osa-miR1858a	Translation	3.5	6.753	1	21
Osa04LNT0290000.1	osa-miR1858b	Translation	3.5	6.753	1	21
Osa04LNT0290000.1	osa-miR2919	Cleavage	3.5	8.457	1	19

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus