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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0290500.1

ACCGAACAAAAGAATAATTTGTCACTGAGAATTGTCATTTTGGCACGGTATGTCTGAAACCGTCCAAGGTTCTGCTATGATGTTTTATGTACAATTGTCCAAGGTTCGTCAGAAGTTGCCCAAGAATCAATCAATTCCATGAGGGCACGAATGAACTTGCTTATACATTACATCAGAAAAGCAAAGAATTCCCCCTTGACAACCCAACATTTTATCAACACCTGTTGTTAGCACTAAGCAACTACAGAGCAACATCATCAGTTCAACTTGTAGGCCCAACTGTGATTCTTGAGGTAGGCTTGGACTGCTTCCTTTATAGCCAGGTTAGGAACCAATTGATGCTCTTTCAGAGGCTCTCGTGTCACCGGGTCGAAATTGCCCACCTTGCAAAGATGTTCAAGGATTATGGACCTCTCATACGTTATACCACTGGGTGTGATCACTGGATCTCTAAAAATCTCAAAGGTTATTTGGCAGCAAAGGTAGTCAGGCACATCTGTTGGTGTATCGTCGATTGTAGCTTTGGTGAAGACTTCTGATAACAATTTCAGTTGGTCTGTATACTCATTGGTTGAGCCATCTCCCACAAGTGTGCCACTAAGAAAGTGGTGCTCCTGCAAAGCATTTTCACATGCTTCCTTTAAACTTTGCATCTTCCAAACTCTCTTAGTGGAGTGTATTTCCCAATCTTGGTATTTTGCCTTCGCAAGAACCTGCCAAATGTCCTCCGCCATTTTGTCCCCCAAATTCGAAGACTTAAGAAGATCCAAAGCCTTGTTGAATTCCTTGATAGCAAGAGCACATTGTTCCTTCTCAAGCATGGCACATCCCAGCAAATAGTGACCCTTGACCAGAGTGTCATCAAGGGCAAGAGCTCTCCTGCTATCCTCTTCGACCTTAGCCCATTCCTTGCGCTTGAAATGGCAGAGGCCCCGGTTGAGCCAGTAGACGGCGACGTCGGGGCAAAGAGCGATAGCCTCGGTGTAGCAGTCGATGGCGGCGCCGAGGCGGGCCTTGTTGAAGCAGGAGTTGCCCTCGATCCGCCGGAGCTCCGCTTGCCTCGCTACCGCCACGCCATCCGCCGCCGTCGCCATAGAAGCAGCTTCTTGGATTTGGTTGGTTTTCCTTCCCGTTTTGCTTCGGTTTGAACAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.693378
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0290500.1 5 264195 T G
Osa05LNT0290500.1 5 266056 T G
Osa05LNT0290500.1 5 264064 G C
Osa05LNT0290500.1 5 265469 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0290500.1 osa-miR5790 Translation 5.0 10.234 1 24
Osa05LNT0290500.1 osa-miR5790 Translation 5.0 24.831 1 24
Osa05LNT0290500.1 osa-miR5804 Translation 4.0 19.302 1 21
Osa05LNT0290500.1 osa-miR319a-3p Cleavage 5.0 14.683 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0290500.1 5 CORN5 Physiological trait Source activity C597 R1838
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus