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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0290700.1

GCATCAAGCATCATGATGTTCAGTTCCAACATCATGCATCATATATATTAAATTTAGGCTTATAAACTGTTTTAACAAACCGATGATATCACAAACTGTGGCAAGTAACGAACACTTTGTGCACGCATGATGATGTTGTCTAATGCTAAAGTATCATCCAATCCAATGCTTTTTTTTCCAGCCTTGTGACGAAATGAATCCTCCAACATTTGGCTAGTGCCATGACAGGAACGGCGTCTTGTTGAGTTCATGATGAGCAGCAGCTACTGCTGCTGTTCTGCTGTTGAATGGGCTGGCCTCTCATGTGAATATGGACAGTTGGTTTCCTCTCCACGGCAGGTTGGGTTGCCATCCTTTTCTTGATGTCTGACGACATGGTTAAGAAAGCTTCCTCCACATTGATGGATTCCTTTGCACTTGTCTCAAGAAAAGAAATCCCTAATGACTCTGCAAAAGCCTTGGCTTCTTCTGTATCAACAACCTTACTGTCAACCAAATCACACTTGTTCCCAACTAGAAGCTTGCATACACTGTCACTGGCATACCTATCAATCTCACTCAACCACTGCTTCACATTATTGAAGCTTTCCATGTCTGTCACATCATAAACAATAATGATTCCATGAGCTCCCCGGTAATAACTGCTTGTTATTGTCCTGAACCTTTCCTGACCTGCTGTGTCCCAAATCTGTAGCTTCACTGTCTTCCCATCGAGTTCAATGGTTCGGATTTTGAAATCAACACCGATGGTACTGATGTAAGTGTCGATGTACGAATCGTCAGCAAATCGGAGGAGGAGGCAGGACTTGCCGACGGAGGAGTCGCCGATGAGGAGCAGCTTGAACAGGTAATCGTACTCGATGCTCATGGCGTCCTCTTGGGTTGTTGGGTCTCGACGGATTTGGAGGACGAAAAACTAACTAGAATTCTAAAAAGGCGAGGTTTTTTAGCGAAGGGGAGGAAGAGACAGGTGGAAGGAGGATCACAAGAAGAAGGCAACCTTGGAAACTAACCAAGGAAGCAAAGCGAACAAAAAGGTTGCTTCTTTTCTTGGTGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.931751
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0290700.1 5 287574 A G
Osa05LNT0290700.1 5 287613 C G
Osa05LNT0290700.1 5 288368 A G
Osa05LNT0290700.1 5 288554 C T
Osa05LNT0290700.1 5 288994 A G
Osa05LNT0290700.1 5 289062 T A
Osa05LNT0290700.1 5 289840 T C
Osa05LNT0290700.1 5 289872 G C
Osa05LNT0290700.1 5 290341 G A
Osa05LNT0290700.1 5 287812 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0290700.1 osa-miR393a Cleavage 5.0 16.452 1 21
Osa05LNT0290700.1 osa-miR393b-5p Cleavage 5.0 16.452 1 22
Osa05LNT0290700.1 osa-miR5083 Cleavage 5.0 22.083 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0290700.1 5 CORN5 Physiological trait Source activity C597 R1838
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus