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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0290800.1

ACAAGACAATCACCTCATAATATCAGAACAACGCCATAGTACATGTCCGGATTTAACAAAGAAATGTACCATATGACCCAAATAAAGTTCTTGTGCGCTGTAAGTTAAGAGAGAAATTCTTATATACCGTTGGTAAAGGTAGTAGTCAATTCTACGTAAAGAGAAACCTTCCATGTCACCACCAAGCTAACTTCAAATCTTCTACGCCATCACCTTCAGATGACTCCTGTGTGGCACTGAGTGCCCGAAAAAAATCAGTCTTCCCCTATTATTATTTCTATAGACGATGAGAATCCCTGCAGGAGTTGCTCTCTTAGTAGATCCTTCTCTTGCTCATTGTTAGGGAATCTAGTTCTGGACAGAGATGGCGTATTGAGATAAATATCATCGCAGTCTTCACATGGTTCCTTCTCATGCAAGTGAATTCTCTGTAAAGCGATAGCTCGCTGAATGGCGAGCCTTATGTACTTGATCAGATTCTCTTCTGTCTCAAAGCCTATTATATCCAACAACCTCAAGTTTTTATGCTTGATGATGTCAGATGATGCTTCCCACACAACATTACTACTGCCAGCATTGTGCTCAAAACCATCCCCCCCACATATGTGGTGAGATATCTTAACATGAAAACTCTTGAGGGAGGGTGCGCCTTCAAGGACAAACAGTGTCCAGTCGAGGCCACTGTCATTACTAATGTTGTAAAGATATACATCCTTAAGATTGCGAAATATGGGGAATAGTTTCTTCGGCTCTTCTGGCATGATCCAAACCATCTCATATTGTTAGTCCAGATGCAAACTAGTTAGAGTTGGCACAGTGGACAGCCAGCTGCTCAGAACGAATGGTTGCTGCATCTTAAGGCAGGTGGAAGAGAAGCGTATCTTGTCAAGCAGTGGGACGCAACCAAAATAAACAGGAGGGTTGACACCCACCCATGTATCACAATCCACTGATTCAAGCTTTGGAACGTGGACGAGTTCAACCTTGATGTAACTGCAGAAGATCATCCTCAATGTCCTGAGCTGTGAGCATGGTGATGCGTCAATCTTGAGCACAGAGTTGCGACCGCTATCGCAAAGCCCGTAGAAGGAGGTGCTGCAGCTGGTGGCAGGAGCCTAGTAGGCTTGGGATATCTGAATCCCGAAACCGCCGACGACGACGGCGGCGGCGGCGGAAGCGTCGACTGTGACGGCGCGCGGCGCGGGGTAGCACAAGGGCACTTGGGGATCGGAGGGCGGGGGAGGAAGAGAGGACTTGAGAGTACAAGGAAGAGAGGACTTGTGACCAGCGATGACGATTGACGACGAGCTTCTTCTCTTTTTTTT

Coding Potentia
Explanation CPC Score
noncoding -1.31864
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0290800.1 5 372971 G A
Osa05LNT0290800.1 5 374279 A G
Osa05LNT0290800.1 5 374379 C G
Osa05LNT0290800.1 5 374524 A G
Osa05LNT0290800.1 5 375372 A G
Osa05LNT0290800.1 5 375441 A C
Osa05LNT0290800.1 5 374799 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0290800.1 osa-miR5542 Translation 5.0 13.345 1 21
Osa05LNT0290800.1 osa-miR398a Cleavage 4.5 20.424 1 21
Osa05LNT0290800.1 osa-miR398b Cleavage 4.5 20.424 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0290800.1 5 CORN5 Physiological trait Source activity C597 R1838
Osa05LNT0290800.1 5 xa5 Resistance or Tolerance Bacterial blight resistance nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus