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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0291000.1

GAAACAGGAAAAATAAAAATCTCCATAGAAACATACTTAGCCCATAGCCCATATTTACACTACACATCACCAAATTCAGCAGGCAAAAAATATCAGACAACCAAATGATGAAGAACTCTCTTCTTCCTTTCTTTTTGGCAAAGACAAAGGCACCATTTGTCCATTTGCCGTTTTTCAGTCTACAGCCTAGAGAGCCCTCTTACTACAATAGAAGGCAATGTATCAACTCAGGTTGATTACATACACAAGATATGCTGAAACTTCTATGTGGTATCACACCTAAGATGTTCAGACAAAATCATGATGACGGTGACTGTGGTGGCTTTGTTGCGTCATTGCCTTGCCGATGTCCTTTACCCATAGCTTCTTCCTCCAAGTGCTCTTTCAGACCTTCTTTGTAGGACTCGACATAGTTCTTCAGTGCATCTGTGTAGTTTGAGGCGCGAGCCATGTACATCCGCTGTAACGCAGGCTTGGCTTTCTCTGCTCCACCCTTTAATGCGCCGAGAAGGTCCTCAACCGTGGTAGGCTCGCTGCTTCCCTCCTCAGTCTTGATGTCGGGTTCCTCTTTGACCTTCTTGTAGTCATTCGGTCTGAGATCAGGGCCAATGTCTCTGACCCAAGAAGCCCCGTACAGCCTGGTTGCCTCCTTCAGAATACACCACTTGTCTTTCAAGGTGAGCTTTGGCCGCTTCTTGATGTGTGGAGGATCTGGCAAGGATGAAGGAAAAGCAATCTCCTTGAGATCATATCTGACGTAATCATACAACTTCCTGCAAACAACTCTGAACTTCATGCCCATTGGTACTGCAGTGCCTCTCTCCTTTGTGTGGTCTGACAACAGATTAACCGGTCAGTAGCGAGCGGAACAGAACCCGCGTGCCACCAGCAGACGACCGACGGCGGCGTCGGAAGATGGGAGGAGATGAAATGAGAGACCCGCCGGCGATCCTGCAGGGGGAGAGCTGATTTATGAGTAAAAAAAAAAAAAAAACCGGAAGCGGCGGCGTGCTCGCAAGGCCGGACTCGGAACCAGAATCCGCTGGCGCCAAGCGGCGGAGAGGTAGATACGAGAAGGCGGCGTGCGGCGAGGTGAGGTCGGAGATATACTGACCGTCGTCGCCGTCGTTGGGAGCGGCGCTCCAGGCGGAGGGAAGCGGC

Coding Potentia
Explanation CPC Score
noncoding -1.07193
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0291000.1 5 688056 A C
Osa05LNT0291000.1 5 688491 A G
Osa05LNT0291000.1 5 688974 A G
Osa05LNT0291000.1 5 689055 G C
Osa05LNT0291000.1 5 689767 G A
Osa05LNT0291000.1 5 689869 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0291000.1 osa-miR5541 Cleavage 3.0 13.687 1 21
Osa05LNT0291000.1 osa-miR2091-3p Cleavage 5.0 19.704 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0291000.1 5 CORN5 Physiological trait Source activity C597 R1838
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus
Osa05LNT0291000.1 5 689055 Blade-pubescence-at-vegetative 8.548091888 -