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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0291400.1

AGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAGTAAATGAAATCAAAGTATGGAGAAAAGCTTCTCCAAACCACACTTCACCTCTAGAAATTAAGACCTATCCACATATTTGAGTTTAGCATGATCAAACTATATATATATATGTCGCCAAGCCAACATCTATCACTCTCACTTATTGAGCAGGCATGGTGAGAAGCTGAGAGCAGTATTAATGGTGGCCACCATGGTGACCGCCGTGGTGACCGCCATAGAAGCCGCCGTGGTGGCCGTCGTGTCCGTGATGACCGCCATAGAAGCCGCCATGGTGGTCGTCGTGTCCGTGATGGCCTCCATAGTATTCGCCGTGATGGCCGCCGTGGCCATGGTGATCGCCGCCAAAGAAGCCGCCACCGCCATGGTGACCGCCGTAACCGTAACCGTAGCCTCCATGGCCGCCATGGGAAGAAAGCTTGTGTGCACCGTACGCCGCGGCGGCGACGGCTGCACCCGCTCCAAGCATCGGAGCCATGTGCCCTCCTCCACCATGGCTACCTCCATAACCCTGGTATGGCGCAGCATAGCCAGCCGGAGGAGGATATGCGGTGGGCGGCGGAGGGTAGTAGCCCTGCTGAGGAGGGTACGGATAGGCATGGCCGCCGCCGGCGACGCCGTGCATGAGGTTGGAGACGAGCCCCTTGTCCTTTTCCATTGTCGTACGTGGTCTGATCGAGAAAGAAACTAGAGCTTTGTCGCGGGAAGTTAGAGGAGAAATCGAAGTGATCGAGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.213591
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0291400.1 5 993905 T C
Osa05LNT0291400.1 5 993903 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0291400.1 osa-miR164a Translation 4.5 23.626 1 21
Osa05LNT0291400.1 osa-miR164b Translation 4.5 23.626 1 21
Osa05LNT0291400.1 osa-miR164d Translation 4.5 23.626 1 21
Osa05LNT0291400.1 osa-miR164e Translation 4.5 23.626 1 21
Osa05LNT0291400.1 osa-miR164f Translation 4.5 23.626 1 21
Osa05LNT0291400.1 osa-miR413 Translation 5.0 17.025 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0291400.1 5 CORN5 Physiological trait Source activity C597 R1838
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus