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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0291700.1

TAGCAAAATACGCTGTCGTTTTGAGAAAAGAACCAAATACACTTATCTCGTCTTAAAACAGGACTGTGACTATTACAACCATAGCATGACATTCACAAAGTAACAAAATACGCTGTCGTTTTTGAGAAAAGAGCAAATACACTCATCTCGTCTTAAACCGGGAATGTAACCATTACAACCATAGCATGACGAACGCCATAGACTGCGATTAAATTTCAGGCTTCAGGAGACTCGCTCGGTCTAGGTGAGCGTGAGCCACCACGGCTACCACCGTCACCATTTCCATCCCTAGGACTTCGGCTACCGTTGTCCATTGGGCTAGGGCTTCCATTGTTCCTTGGGCTTGGGCTGCGCCCGTTGGCAGCTGCAGGGCTACGGTAGCCATCAGACGGGCTCCTGCTGTTCTCCCTGCCCCGGGGGCTGTCACCGTGATCTGAGCCATTACGCTCAGCATTATCCTTGGGTGGTGGGCTCACCTGGTCCTGTGGACTCCTTGGACTACGGCTACCATCAGGGGTGGGGCTGCGCTTCTTTTCATTTGCTGCTGGGGAGATGGATCGCCTGGGACTCCTGCTGTAACTAAGACTCCTTGATCTTTCAAGCTCTCTGCGTGCCCTGGGAGATCCAGACAGGGATCTGGACCTAGACCGGCTGTAACTGCGGCTCCGGCTCCGGCTCCGGCTATAGCTCCGACTGCGACCACGTCCACGGCGTGGCGATGGAGAGCATGAATAACTTCTCTCACGCCTGAGATTTCTTGGGCTGTTTTGACAGTTTCTTTCTATGTGACCTCTCTCCCCACAGCGGTAACATTTGTTCTTCCAGTCACCAGCCTTGCAGTCTCTTGCCCAGTGACCATCAATCCCACAGTTAAAACACCGACCTGTTCCAGGAGGAGGTCCTCTCCCCATATATTCACGTGAACCACCAGGACCACGTGGAACCCCTTTAGCAAACTCAACAAGAATGCGGCTTCCATCAACATCCCTGCCATCAAGGTTGTACCTTGCTTCCTCAGCATCACGGGGATCACTGAACTCAATAAATGCGTAGTCGCGCTTCAACTCCACTTCACGTATTCTGCACCAATGGTTGCCAAACAGTAAGCCATCATGATTCAAGTACTCAAATGCATCACCGACTTGCAACGTCCACTAAAACAGTCAATAACATTACACCAAGGGCGCCCTTCAACAAAGTCCTCGACAAACTTTGGAAGAATGGCCACCAATTCCACCAAGGGCACCCCTTCCACCAGACCATCACAGACCTCCCGGTTTGTGTAAAAAACCGAAAAACCTTCCATATCTGCTGAAATGGTATTCTAGGTCACGAGAACGAGTGCGGGAAGACAGTCTACCAACATACAAGCGCGTGCTTCCATAACGATCATCATAGCGCGGCATCTCCTTGGAGGAGAATGGCGGCGAAATCCTAGGTCGGGGGCGGCGCGGATGCGGCGGCTGTCAGAA

Coding Potentia
Explanation CPC Score
noncoding -1.18488
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0291700.1 5 1046584 C T
Osa05LNT0291700.1 5 1047028 A C
Osa05LNT0291700.1 5 1047715 A G
Osa05LNT0291700.1 5 1047818 G C
Osa05LNT0291700.1 5 1047865 A G
Osa05LNT0291700.1 5 1047906 A G
Osa05LNT0291700.1 5 1048005 G A
Osa05LNT0291700.1 5 1048103 A T
Osa05LNT0291700.1 5 1048135 C T
Osa05LNT0291700.1 5 1048535 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0291700.1 osa-miR164c Cleavage 5.0 17.754 1 21
Osa05LNT0291700.1 osa-miR5144-5p Translation 4.0 16.968 1 21
Osa05LNT0291700.1 osa-miR5490 Translation 5.0 14.998 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0291700.1 5 CORN5 Physiological trait Source activity C597 R1838
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus