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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0291800.1

GTTGCAAGGGATTTCAGATAATGCTCTCAGACCCACGAATCACAACAGTTTAATATAACCACATAATAAGGATCAGTAGCTAAACGAACCAAAATATAATGGTCAGCTATACACCATATGTTTTGTTGCAATAAAATTTGACATTGCTTGTGCATGTCATGCTTGTGAGCTTGTTTTACAAGCTCAAAAAAAAGGGGAAGAATTATGATTACCATGCCAGTCAGTCATCCTAGTAGGCTGCTGCTGTTTTGGATCTTCCACTAACCCTTCTGCTTCAAGACGAACCAAGGCGTACATGGCCTTAAATTTGGATGTCAGACACCAGTCTTCATGCCTTGGCAGTCATCAACCTCATAATTCTATACTGGGTCACACATCAAAACCACTGGTTGTGATTTGCCTTCAAAACCACACGAGCATTACTATACGTACAAGCCCAGTGGTCGTCTTGTGAAAACTCCTCAAGGACCTCCTCTACTGCTCTACATCTGGTGATCAAAGTAAATGATGCATTGATGAACCCCTGCATCCAGATAAAAGGAGCAGCTCTCAGGAAGCAGTATTTTCATTCGACCTGTGAAAGAAACACCAAGTTAATTTATCCCTTTTACCTCCTCTCCAGCAAGCCGGCTACTTGTCCTTTTCTTCAGTTGATGCTTTCCTAAGACTCAATATTACTCCACCACTTAGACACGTGGTAACAATAGCAAGCGAAGCTTCAGTTGGTATATGATAACCAAAAAAGTCAAAGACCATCTTTGTCCCTATGAAGCCCAAAACTATACCAATTGCAGGCTGCAAATAGTCCAATTCAGACATGCTTTCAGAAATGAGTACGTAGAGTGACCTCAAACCAGAAATAGCAAAAATATTTGATGATAACACTATAAGTGGATCCCTTGTGACACCAAAAACTGCTGGTATTGAGTCAATAGCGAAAGCAATATCACTTAGTTCGATCACTGCCACAGTCAACAGCAAAGGTGTGGCTTTCCATAAACCTTCTTGAGTTGTGAAAAACCGATCACCATCGTAGTAATCAGTGACAGGAATGAATCTTTGGCATGTTTTCACTATGAAATTGTCAGATAGATCAGATTCTTCATCTTCTTCAGCAAATAACTTATATGAAGTGAATAGCAGGATCAAAGCCAATAATAGGTTCACTGCTTCAAACCTCTGAATCGTAGCTGCTCCTAGGGTGATCATCACCGTGCGGAAGATCACTGCTCCAGCAATACCATAAGAGAGCACCCGGTTCTGGTATTCCTGTGGCACTTTAAAATACTTGAAGACCAGAACAAAAACAAAGAGATTGTCTACTGACAAACTCTGTTCCAATAAATATCCAGCAAAATATTCAGATGCCTTCCCAACCCCATCCCTCAGGGCGATGCTAACGCCGAAGAAAACCGCAGCAAGGACCACCAAAGTAACTCTTCTAATGGCTGATCCTTTCTTTGTGATTCCGGTTTCTGATGCAGGTTTCGTGCTCTCCTTGTCGGTAGTGCGAACGGGGGGAGTGGAACTTGGTGCCTCAATTTCGGAGCTGAGGGAGAGGCCATCCTCCTGATCAGCACCCCTGGCTCTCCTCCGCCTCCTCCCACCTTCGCCGGTGCGACGCGACGCCGCGGCCACCGTGACCGCGGGATAACGCCCCGGCGACGGGGGGAGCGCCACGTGTCCCCGGCCTATCATCCATGGGGCAGATAGCTTCTCGAAGGAACGGGTGGTCCCGGCGGTGGCGCTGGCCACGGCGGTGGAGGCGGAGGCCATCGCCGGCGACGAGGTCGGGGAGAGGCGGGCGGGGGAGGCGTCGTACGGTGCTCAGCCAC

Coding Potentia
Explanation CPC Score
noncoding -1.21438
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0291800.1 5 1130860 T C
Osa05LNT0291800.1 5 1127860 A T
Osa05LNT0291800.1 5 1127074 C T
Osa05LNT0291800.1 5 1127207 A G
Osa05LNT0291800.1 5 1128423 T A
Osa05LNT0291800.1 5 1128623 A C
Osa05LNT0291800.1 5 1128965 A G
Osa05LNT0291800.1 5 1129294 A G
Osa05LNT0291800.1 5 1129441 C T
Osa05LNT0291800.1 5 1130160 C A
Osa05LNT0291800.1 5 1131626 A G
Osa05LNT0291800.1 5 1131768 T C
Osa05LNT0291800.1 5 1131934 A G
Osa05LNT0291800.1 5 1132177 T C
Osa05LNT0291800.1 5 1132375 T C
Osa05LNT0291800.1 5 1128151 T C
Osa05LNT0291800.1 5 1130619 T G
Osa05LNT0291800.1 5 1127861 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0291800.1 osa-miR5789 Translation 5.0 20.366 1 21
Osa05LNT0291800.1 osa-miR1857-5p Cleavage 5.0 16.192 1 21
Osa05LNT0291800.1 osa-miR2095-5p Cleavage 3.5 15.868 1 22
Osa05LNT0291800.1 osa-miR2929 Translation 3.5 14.646 1 21
Osa05LNT0291800.1 osa-miR5149 Translation 4.5 19.73 1 22
Osa05LNT0291800.1 osa-miR5152-5p Cleavage 4.0 9.102 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0291800.1 5 CORN5 Physiological trait Source activity C597 R1838
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus