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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0292600.1

CACATGAATTTCCCCCATCTTTGTTCATAATGAAATCCAGTTCATGAGTTTGTTTCTGGCAACAACATTTTCAGTGTAAGATGCCTGGAGCCCTGGACTGGAGGGGCATTACGTTCCAGCTTTATTATTGCTGCTGGAGTTCACACAGGCATGATCATCATCATCACTAATCAACAGGGGAGTGCAGTAGTGGTACCTACAGGAAACATGCTCTCTCATGAGATCGGCATTGCTGAGGACAGCTTGTCCGCCAGCCCTCCGGCCATCCTCTCCGCTCGCTCCCCTCGTTCGCCGGTGCGTATTCTGATCACGTCCGACACGGGTATCAAAAATATTTTTCCATCACCAATTTCTCCTGTTCTTGCCTTTTCAATTATCTTGTCAACAACAGCTTCAACATAGTCAATGATCTCGGATGAATACTGGGAAAGTTTAGGTATATGTTTTTTCAAATTTCAACATTACAAAATAGTAATGAAGAAATCACCTGATCCTTGGACACCACTATTTCCATCTTAACTTTATCAATAAATGTATCTTCTGCAAATTCTGACCCTTCATGCCTCTCAGTTGACCCGCCCTGTGCGCCGAAACCCCGCACGTCGGACACCGTCACGCCTCTGATCCCCATTTGCAGCAAACCCGATGACACATAAGGCACCCTCCATGGCCTCAGGATTGCCTCCACCTTGTAGAACTCCGACTCCGGCTGGTACCCTGCTGCGGCGGCACTCTGGGCGCGCGCGGCCGTGGGCGGGAGGCGACGAGGGGGCGCGTGGTTGACTCGGAGTGGCCGCTGGAGGCCCCGCGAGCGCGAGGCGAGGAGGAGGCGGGAGGTGGTGGTGGTGGTGGTGGGAGGAGGCCGCGGGGAAGCCGGAGGATGGTGGTGGCGGAGGACGCCACAGGACGCGGCGGCGGCGGCGGCGGTCGCCGGCGACGACATGATTGAACCGTCGGCGATGGAGGAGGATGTGGAGCGTGAAGACTAGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.808085
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0292600.1 5 1925241 G A
Osa05LNT0292600.1 5 1924396 G T
Osa05LNT0292600.1 5 1924428 T G
Osa05LNT0292600.1 5 1924704 A C
Osa05LNT0292600.1 5 1924794 C T
Osa05LNT0292600.1 5 1924882 C T
Osa05LNT0292600.1 5 1925012 C A
Osa05LNT0292600.1 5 1925676 A G
Osa05LNT0292600.1 5 1926082 A G
Osa05LNT0292600.1 5 1926673 T A
Osa05LNT0292600.1 5 1926846 A G
Osa05LNT0292600.1 5 1926979 A C
Osa05LNT0292600.1 5 1926949 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0292600.1 osa-miR5821 Translation 4.5 23.485 1 21
Osa05LNT0292600.1 osa-miR5075 Translation 4.5 19.047 1 21
Osa05LNT0292600.1 osa-miR5496 Translation 4.0 21.564 1 21
Osa05LNT0292600.1 osa-miR5075 Cleavage 5.0 18.647 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0292600.1 5 CORN5 Physiological trait Source activity C597 R1838
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus