>Osa05LNT0292900.1

CCCCCCCCCCTCCGCCGCCGCCGGCATCCTCGCCGTCGCTGGAGGCATGGCGACACGGCGGCCTGAGAATCCCCCACCGCCGGATCCTGCGGATCGACATCCTCACATCCCTCCTCCGCCGACGAGAATTCATATGCAAGCACATCATATCCCCTGGACTCTGAAGAATCTGCATGAAGCCATGTTCAGACTGAGAGGTCCGAAGCATATATTTTTGTTCCGGTGTGCTTATGCATGTGCCCTTCTAAAAACCATAGATGAAAAAAAAATGTCTGGACTAACAAAATAAATATGCATTAGTGTATATATCAGAGTCAGAGATGACCATTTTGGATAAAATAGTTAGGCACCGTTGCTATATTAGAGCCTTGAGAATTTATTCAACCAGCAACAAACAGATGGTGATGATAAGTCACATGGATCAAACCTGCAGAGACCACAACAATGATCAATCTGCAAGTAGACTACAACGACAGTAGTAAAAGCAGCACATGTATATGAATCTGGCCGGAATTCATGGCCGGTCATTTCGACGTCGACGGATCGGCCGGCCGGCCGGCGGTGCATCACATGGACGGTGGCCGGAGGTAACGACGGCAGTGCCTAATCCCTTTTGCTTCCATGTCTTATTGTTTCAACACTCTGAGCTTACTGTCGCCTACTCACGTGAAGGCATATGTGATGCAAATTATACTATTAAACCTATTGTTTTTCAGGCCAACTGAATTGAGTAGTAGTAGGAGATATTTCCTGTGCTTGAACGGTGATTGGTCCATGCTTGAAACGAATAAGTTCTTTTATTTAATTACTCTGCCCAATTAGGGTCTAGTGCCAATAGGATATATAGCTAATCATATCAGAGATGTTTGTTAACTTGACTATTCTGATTCCAATCTTGTTAAAATATGTGTG

Explanation	CPC Score
noncoding	-1.15694

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0292900.1	5	2207544	C	A
Osa05LNT0292900.1	5	2209193	C	G
Osa05LNT0292900.1	5	2209361	T	G
Osa05LNT0292900.1	5	2209248	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0292900.1	osa-miR1319b	Cleavage	5.0	12.464	1	24
Osa05LNT0292900.1	osa-miR1424	Cleavage	4.5	13.815	1	21
Osa05LNT0292900.1	osa-miR444d.3	Translation	5.0	13.316	1	21
Osa05LNT0292900.1	osa-miR5522	Translation	4.0	18.15	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0292900.1	5	Ph5-1	Morphological trait	Dwarf	RG313	RZ556
Osa05LNT0292900.1	5	CORN5	Physiological trait	Source activity	C597	R1838
Osa05LNT0292900.1	5	nan	Resistance or Tolerance	Drought tolerance	RG313	RZ556
Osa05LNT0292900.1	5	nan	Morphological trait	Root	RZ556	RG313

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus