\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0293300.1

TGAGCAGGGAAGAAGATATGGCATAGAGGATCTGAGGATAACTCTGAACCAGAAGATCTGGACTAAGTTTCAGCACCACTCTTGCGCTTCCCCAGCTCGTCGGGTTCCATGAAAGCTCGAAGCTTCCTAAGAGCTAGGCTTCTGAACTCCATCGACCTGAGGATGCGGTCCATGGCACCGACACCAAGTAACTTGTCATCGGCCATGTTGGATACCGCTAGTTTCTTGGCGAAGGTGACCAGGTGCATTTGCAAGGTTGCTTTCACATTCCCGGCAATGAATTCCAGTATGGTGACGAACATGATTCCCTGGGCAAACACCAAGCTGTAGAAGATGTTGAGGGACCACGTGATGTTCTGGTTTTGGTCATTCATGATGTCCCCGGGATTCAAGTAGTCTTGCTTCTTGAGACGCTTCCAGGATAGGGCTAAGACAGTGACCACAGCGGCCACCCTGGCCAACCACACGGCGGCAAGGATGGTCATCCCGAGCAAGGCTTGGCACCCATAGATGCTGCACAGGGTGCCTTGCCTCCGACTCCGAAAGCAGTGGCAATGGTGCACGAGGGACACAGGTAAGGTGATGTTACAGCCATGCAACTCCCTGCTGCCCAACGGGGAGTGGGAGAGGAGAGCTATATATGGAGATCGGGCATTATCCGAGCGAGCGGCTACCTGCTGCTCAGTTCAGGGACTAGGGACATCCTCAGTTTGCCATGGAACAGAAGAGATCAGCATGGTCAGGATCAGAAGATGACGAGTCAGTACTGCAAACTCCCGTGCAGCTAACCGTGAGAACGATTACAGTGATCGACGGTGATAGCAGCGGAGATGGTGATCAAAATGCAGGACAAGTTTATATAGATACAGAGTTTGGATAATTCGATGTTGAGATGGAACATAAAGCTAATTCAATGTCGAGAAGGAGCTTAAACTATAATTTGCTGTTTGGAATATACTTGCATTGCATCAATGAGAATCTCAATTGGTATATGTGCTACTTCGCTTTTGCCCGTCGAATGTTTATGAGATCTCATAAAAAAACATTGTAC

Coding Potentia
Explanation CPC Score
noncoding -1.11884
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0293300.1 5 2354154 G A
Osa05LNT0293300.1 5 2354269 G A
Osa05LNT0293300.1 5 2354383 A T
Osa05LNT0293300.1 5 2354753 T C
Osa05LNT0293300.1 5 2354921 C A
Osa05LNT0293300.1 5 2355091 A T
Osa05LNT0293300.1 5 2355423 A G
Osa05LNT0293300.1 5 2355610 T C
Osa05LNT0293300.1 5 2355621 T G
Osa05LNT0293300.1 5 2356221 A G
Osa05LNT0293300.1 5 2355742 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0293300.1 osa-miR5530 Cleavage 5.0 20.308 1 21
Osa05LNT0293300.1 osa-miR1871 Cleavage 4.0 23.897 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0293300.1 5 CORN5 Physiological trait Source activity C597 R1838
Osa05LNT0293300.1 5 nan Resistance or Tolerance Drought tolerance RG313 RZ556
Osa05LNT0293300.1 5 nan Morphological trait Root RZ556 RG313
Osa05LNT0293300.1 5 Ph5-1 Morphological trait Dwarf RG313 RZ556
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus