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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0294100.1

AGAGAGAATTTAGTTTTGGTTCCGATCAAAACTTTTACATGAATGAATATATATGACAAGTGCGCAAAAACAATGAGACTCTAGGACCAGCGAACAAAAACAAAATTGGCACTAGGCCTCGTTCCATTATTATGTTTCTGCTAAATTTCTGATCCGGTTGGGCTCCCGTGATTGCTAAAGTCATCGTCGAGAGATCTCCTCGTCGATTCCCACAGCTGAGACTCGATTCCCAGCTTCCTCAGCTCAGTAAGTCCTCTCTCAACTTCTATGATATCGATCGTAGAAACTGGATGATTGCCTTGTTCTATCCAAAACTGTAGCCGCTCATCAGCTATATCTTCTTCTATGTCATGACTTTTGGCCCGTCTCCAGAAGTAGGTTAACCATGACTGCTTGAAGCGTACGTCGTCTTGCTCTTCCTCGCTTAATTCTAATGACTCTGGAGGGTTCTGGCCTTCAGAAGATGGACCTGAGAGAGGTCTGACGCGTCGATGTTCTGATAAAGCAAGCATGACTGCGTCCTCTACCTTGAGTGAAGATAATTCACGTAGTCCTCTCTCAACTAAAAGCATGCTCTCAATATTTCCATCTCCACTCATATCATTCACGTGACTTGCGTCAGACATTTTGCTTTTGGTCTCCATGTCAGCATGATCTGACAATGCTCCATCTCTAGCTTTTTGCCCAATTGACAGGACAACTTCAAGTGAAAGTGGTGCAAATGATGACCAGTATTCTTGTTTTTCTTCAGCAATATCACAATGTATACCAAGTCTAACACACAGTTTCCAGTAGCGAGCAAGCCAACATCTCTTTAGCACCACCTCCTCCATCTCTTCTTGAGACAGGACCATTCTATTGGTTGCTCCGTGAAGAGATCTCACGATTGATCCCGTACTTTTTAGACGCTGAGATACGGATGATACAGAATTGGCAACCTTTGCTTCTGACCGAAGGGCTGCAATTTCATCACAGCTAGCGCTGTTAGACCTTCTTGAAGCACTTCTCAATGAAGCCTTTCTTTGTTGTAGCGCTGCATCCTTTCTGCTAATCAGATTGGCCTCTGGCTCTATAGCATCAGCAATAACAGCAGCCATGTGCATGGACTTAGCATCTCCTTCCTCACTCCTTTCTTCTGCAAGGTTAAATTTTTCGTACATGCCCTCGGTTTCCACTTGGAGTGAGTTAATCTCATCATGAAGAGAAGAAGATGTGCGCCGCGCTCTTAGAGAGCTTCCAAGATCAACTGATCTCCTTTGCTCCCGTCGATTTATTGCGGGCGACTCTGACCCTGGACCGCTCGTCGCTGGCCGGTTCTGTTGCTTGATCGAAGGTATCATCGGAACTGACTTCCCGGGCGTGTATCGGTTCGTCAACGACGGTGGTCGGCTCACCGGAGCCTGATCCGAAAGGTAACGACCTATCGATGGGGAAGGGGAGCGGGTGCCGGTGCGCCGCGGGGTGGAGGAGAGCTCGATGGGTGGCCCCGAGAGCTCGTACTCGTCGTCGTCGCTGCCGCTGCCC

Coding Potentia
Explanation CPC Score
noncoding -1.23443
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0294100.1 5 2767482 G C
Osa05LNT0294100.1 5 2767591 T C
Osa05LNT0294100.1 5 2768055 C T
Osa05LNT0294100.1 5 2768755 T C
Osa05LNT0294100.1 5 2769185 G A
Osa05LNT0294100.1 5 2769433 A G
Osa05LNT0294100.1 5 2770528 G A
Osa05LNT0294100.1 5 2770834 T C
Osa05LNT0294100.1 5 2771669 T C
Osa05LNT0294100.1 5 2772034 A G
Osa05LNT0294100.1 5 2772469 G T
Osa05LNT0294100.1 5 2773242 T C
Osa05LNT0294100.1 5 2773367 T C
Osa05LNT0294100.1 5 2773476 T G
Osa05LNT0294100.1 5 2774124 G A
Osa05LNT0294100.1 5 2774310 A T
Osa05LNT0294100.1 5 2774792 A T
Osa05LNT0294100.1 5 2770172 T G
Osa05LNT0294100.1 5 2774217 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0294100.1 osa-miR166h-5p Cleavage 4.0 14.03 1 21
Osa05LNT0294100.1 osa-miR418 Cleavage 4.5 15.374 1 21
Osa05LNT0294100.1 osa-miR1862a Cleavage 4.5 18.249 1 24
Osa05LNT0294100.1 osa-miR1862b Cleavage 4.5 18.249 1 24
Osa05LNT0294100.1 osa-miR1862c Cleavage 4.5 18.249 1 24
Osa05LNT0294100.1 osa-miR1862f Cleavage 4.5 21.257 1 20
Osa05LNT0294100.1 osa-miR1862g Cleavage 4.5 21.257 1 20
Osa05LNT0294100.1 osa-miR2105 Translation 4.0 19.27 1 20
Osa05LNT0294100.1 osa-miR1862g Cleavage 4.5 18.249 1 20
Osa05LNT0294100.1 osa-miR1862f Cleavage 4.5 18.249 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0294100.1 5 CORN5 Physiological trait Source activity C597 R1838
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus