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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0295100.1

CAAAACCTTCGTTGTCCACTGAACTATATAGAATATTCAAGGTGTACATGCAAACAACAAATGGATTTTTACACCTTTCTTATGGAGTTTTACATGGACTTTATGGAAAGCATGTTGTGACATCCAATCTCAGATGGAATATCTCCTACTTACCAAGCTTAAGAGTAAGTTAGTGATTGATCTGCTGACTGTTGGATTACTGATTTTTGCCACTTAGCCAGAAATGGTTGGTCCCAACTCCCAAACTGTTCATTGGGCAATCAGTTGGCAGAATACCTTCTCACCTTGGCTTACCTTCACAATGCAACTTCCATACTAACTAACTGGATCAAAGTTATCCTATATCTGGATGAGAACTTGGAGATGCCATTTACTAGTTTCAGAGACTTGGCAAGGTTGGGTAACCTTTCACAGGCCCGACTAGTGATAGAGCTTCTTGTAATGCTTCCAGGAGATAATCTGGGTGGTCCTCAATGCGTGCATGGCCAAATTGTGCCGGTATTTTGCGTAGAACTCTTCCAACAATCTTGCGAGCATAGCCGCCATAAGCTATCCCTCCAATAAAGGCTTGCTGACAATCAGTCACTCCAGAGGTTGCTGCCCCTAAGTTTCAGTAAGATAAATAAAGTTGGATAGTTCATGGATTAAATAAACATATTACCAGAATATAAAACATTAGTTTGATTGCTCAGTTTCAAAAGGCATAGGTTTAATTGCACACAGTTTAATAGTTCAAGGGCTTAAAATGTGATTTTGCCTAAAGTATTCTTTGACCTCATAAGTTGAACAAGAAAAGGAACAAAGTAAACAAAATCCGGTGACATGTTAAAAAAAAGTAAACAAAATACCAGGAAAAGTTGTAGATTGGAAAAGACCAGCTTTCTTTAGGGATTCTATGGTGTATGAGTTGGTGCCACCAGCCAACTGATAGAAGCCAGGAGGCCTATTTGACATTGAAGACAAATGAACAGCAAAGGATACTGTTTCCCTCGTTGCACCTCGGCCTATGTCGCCACTCATCGGCCGGCCATCTAACTGCTTGTATAAATAAGGTAACTTGAATAACCTCAGATTTTGAGCATATGGATATGGATATGGATATGGATAAGGTTCAGATTATGACATGAAGTGGACCAGCAAAGCATTTACAGAAAAACAGAATGTAGAATCAACTAGCCAACACCAAGAAAATAATTGTCCTAATAGAATTTCAAATTGCTAAAAGTATAGTTATGAACAGTATGATCATGTACAGACAAATTAGAATCTGCAGTTGATACATTTGTTCTCTTCATAGCAAACCTGCCAAAGATTATAGCCTTGAAGATGGGACTGCATTGTTGTGTATATTGCATTCATTAAATTAACTGTTGAATCGCCAACATCAGGCAGGCTGACTGCAATCAGCTTCACATTATTGATTGACTCACCCAAGTTGCTCCAGAGGGTATTGAACATATCAGTTCCCTTTCCAGTGGTATGTATCTCTATTGCATCAACATCATTCCTTTTCAACAGTTCAGCAGTCATAGCAGGATCTCGAACATACGACATAGCTCCTGAAATGTTTTCAAGCAAGGCTTGTAGCTTTTATTCTGTCATAAGGGCAAACCGACAAGCATCGTCCACAGCCGTAGCACCGCTCCGTAATTACACCACCCTCAAGTTTTCCACATGAAGGATCAGACTGAGAGTGCTCTTCCTCAATCATAACCCTCTCTAACAATATTGCATCAGCAGGACAGACTTTCTCACATGGCTTTGAGCAATCTGGTGGGCAATCCTCAGGATCAAATTCAGCTTTACGGAAATGAAGATCTCTGCAATCGTCATTAACACTAACCATCACCCATGGCCTTTGAACTGCTGGCACAATTGAGGCTGCTACATCAATACCTTCATTCACTGCACCCACCACAGATGCGTCTGCTGCACAATCAATGCAATCCACTCCGGCAAGCGTGTATACAAGGGAGAGATTCCTGACATCGGCAGCATCCTCGAAGCTGGCGCCGCAGATGAGCTTGACCCAGTCCCCGCGCCGGAGGGCCGCGACCTGCGGCGGGTGGTGGTCGCCGGCGAGGCGGCCCCTGCGAGCGGAGGCCGCGGCTCGGACGGCGGCGTGGGAGGCGAGCAGAGACCTCGCCGTCGGCGGCGCCATGGCTTCTCCGGTGGCTGCAGCTTC

Coding Potentia
Explanation CPC Score
noncoding -1.04752
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0295100.1 5 3349381 T C
Osa05LNT0295100.1 5 3350383 A T
Osa05LNT0295100.1 5 3350735 T C
Osa05LNT0295100.1 5 3351011 T C
Osa05LNT0295100.1 5 3352183 G A
Osa05LNT0295100.1 5 3352249 T C
Osa05LNT0295100.1 5 3352653 G C
Osa05LNT0295100.1 5 3349928 T A
Osa05LNT0295100.1 5 3352773 A G
Osa05LNT0295100.1 5 3352783 A G
Osa05LNT0295100.1 5 3349509 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0295100.1 osa-miR6246 Translation 3.5 15.533 1 23
Osa05LNT0295100.1 osa-miR1866-3p Translation 4.0 18.846 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0295100.1 5 nan Morphological trait Root C119 C859
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus