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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0295500.1

TGGGGGGCGTACATGAACATGTTGCTATTTTTGTTGCTTTGATCCCAGCTATGTCAGTTTTTCAGGTCCTCTTCGAGCTCATCGAACTCCCACCCGTTAATCTCCTCACCTGAAAAATCTCTGTCCTCCGATCCAAGTTCTGCTCCCAGGTTTGCGAGCTCATTGTCAGGATTCAGATGCTGCTCGGGCTTCATGGGAGATTTTGGAGAGTCGACGTGTGCAGCCTTAGGCGTAGCGGGTGCCTGGATTGGTGAAGGGCTCAATTCAGATCTCTCCTCAGGTAGTGGCTTTGATTTATTAGCTTCTATGCTTAGCATTGGCCTTTCTATAGATTCAAATTCTCCCCTCAATTTCTCGATCTCGGCAATTAGGTTCTTGACCTCTGGATCATCTCTCCTGAATATATAGAAGTTCAGTGTTCAGATTTCAGAGGAGCACGATTGCGTGGATGTAAATTTGAAAATAATTTATCAAGGAGAGAGCAGCCCACAGTACCTAGAATTAGCCCATTGCTCAGAGTAAAATAACTTCTTTATGTGATCAGCAATGCTTAAAGCAATTATGATCTTCTTTTCAGTTTCCAAATATTCCTCTTCAAGGCTTATTCGTGGGTTTGTCTTCTCGGATGCTTCATCATCTTCATCTTGTTTTGTCTCTTCC

Coding Potentia
Explanation CPC Score
noncoding -1.02209
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0295500.1 5 3653807 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0295500.1 osa-miR160d-3p Cleavage 5.0 11.68 1 21
Osa05LNT0295500.1 osa-miR1428a-3p Translation 4.5 12.453 1 21
Osa05LNT0295500.1 osa-miR1432-5p Cleavage 4.0 16.958 1 21
Osa05LNT0295500.1 osa-miR396f-5p Translation 5.0 22.444 1 22
Osa05LNT0295500.1 osa-miR2871a-5p Cleavage 5.0 18.685 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus