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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0296000.1

GGTAGACTGGTAGTATTTATCATGATTAAAATGGTTAAACATCAGTTTACATCTAGTACATCCAGAATGGAGGTATGCAACAACAGATCATCTAACATCAGCTTTCTATGTAATCTAACCAACATGGAATGCTATATACACAGCACAGTAGGGAGGATGCATGGTGCTATTTTCTTTTCTCTCTTTTTCAGTATTGGGAGGTAAAGAATTCATTAGAAGATGGTGTCTACTGTCAGCTTCCTCTTGGGAGGTGACCTCTCGATGATCTGCTTCTGCAAGTCCATGAAACTTAACCCCTTATGTGCAAACAACCTTCTGAGATTGATAACCGAGAGCTCACTGTATTTTGCGATGGCGAGATCAGCCTGTACCAGCTCATACGCAGGATGAGCACCAATGAGTGCAACTGCCATCATGGTACAGTTGTGAGCAGCGGTTACGCCTCTCGGGTCATCCTCAAACACCACACACTTTGAGGGCTTCCGATCCAGCTTCATAGCAGCTGAGAGGAACCTATGTGCTATTGACTCCATATCATCCTCGTCAGTCACAATTGCCTTGAAGTATTTGCTTAGTTCCATTCGATCCAAAGCTTCAATCATGCATCTCCTATCCAGGGACGATGCGACAGCACAAGGGATGCCTGCTGTCTGGACAGCATCCAACCATTCCCGCAATCCATTTACTGGTGTATCAAGTTTGAAGAGATTTTCGTAGTATAACTCTATAAGCCGTGCCTTCAGTCTTTCCATTTGACTTTCATCTTTTGCCCAACATAAAACCTTTCTAAGCACATGGTCGGCAGCACCATGAAGAATACTCTTTTGGACATGACCAGCATTTGGGATATCCTTCCCTTCTTCCAAAGCAAGCTGTCTCCAGGCATCCAACTTTAGTGAGTCTGTATCAGCAATTACGTTGTCCCATGAGAAAATAAGCCCACATGCTTCATCTGGCTTCATAGCATGTCTTATCCTTTGAAGGAAGCATTCTTGCAATTTTTCGTTCAGATAATCCACATCGACCTTGAGTGGTCCATCCATCCTAAATGTCTCAAAACCTTCCCCATATTCAGCTCCAATTGCCAGGTAGGGGAGGGAAGGCCTCGAATCCGGACGCCCTCCTCCGCACCCCCACCATCCTCCCGTTTCTTGGTCTGGGGAATCGGAGGCTGGAGCATGGCGGCGCTTGTCGGGAGGAGGAGGGAAGCGAGGGGAATGGCGATGGCGAGGCGGCGGTGCGGAAGCTACACGACTCCATGAGAAGGGGAAAG

Coding Potentia
Explanation CPC Score
noncoding -1.18021
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0296000.1 5 4097364 A G
Osa05LNT0296000.1 5 4097990 T C
Osa05LNT0296000.1 5 4098011 G A
Osa05LNT0296000.1 5 4098455 T C
Osa05LNT0296000.1 5 4100108 A C
Osa05LNT0296000.1 5 4100593 A G
Osa05LNT0296000.1 5 4098426 C A
Osa05LNT0296000.1 5 4098826 T C
Osa05LNT0296000.1 5 4099103 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa05LNT0296000.1 DTM_#DNAt_MULE_japo_Os0084 Chr5 - 4098806 4099178 372
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0296000.1 osa-miR812r Cleavage 4.5 24.544 1 24
Osa05LNT0296000.1 osa-miR5824 Translation 5.0 17.783 1 24
Osa05LNT0296000.1 osa-miR159a.1 Cleavage 3.0 16.214 1 21
Osa05LNT0296000.1 osa-miR159b Cleavage 3.0 16.214 1 21
Osa05LNT0296000.1 osa-miR159c Cleavage 4.0 16.214 1 21
Osa05LNT0296000.1 osa-miR159d Cleavage 4.0 16.214 1 21
Osa05LNT0296000.1 osa-miR159e Cleavage 4.0 16.214 1 21
Osa05LNT0296000.1 osa-miR159f Cleavage 4.0 16.214 1 21
Osa05LNT0296000.1 osa-miR1849 Translation 4.5 16.05 1 21
Osa05LNT0296000.1 osa-miR1428b Cleavage 5.0 18.834 1 21
Osa05LNT0296000.1 osa-miR1428c Cleavage 5.0 18.834 1 21
Osa05LNT0296000.1 osa-miR1428d Cleavage 5.0 18.834 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus