Transcript

Sequence

>Osa05LNT0296100.1

TGAAAACTCATGCATTTTCACCGTATATTCACATGATTTTAGCAAGCATCAAACCTGATAATGTACAAGAGCGCAAGGGTGTAATGTTATCAGAATTGAAACAGGTCAAATTGTAAGAAACATAAGCACTGATTAACATCCTGAATTTTTACATGCCTACAGTGGATAGCTAATAAACACCAGCATTAATCATTCGATACAACAGGTAGCCAACCAATGTTTCACAAATGACAATTGGAAATGTTTCTTCATCGGGGAAGCTCGATTCGTTCTCGCTGCTGTAGAAGAAGCCGGCGAGGGTTTGGGGGAGCTTCTTGCGGTGGTCGGGGTCGGAGATGAGGCCGCGCCACCGCCTGGACACGCACTTGCATCGGCAGACCGACTTGACGGGGAGGCGGGAGAGGATGTCGACGATGAGGTCTTCGGTGAGCTCGGCCGCCGGATTCCTCGTCGCACTGGATCCCTCCTCCTCCTTCTTGGATTTCTCTCTCGCCATGTCGCCGAGAAGCGCGAGCGGCTACCGGCGGAGAAGAGGGCGGCGGCGGCGGCGGCGAGGGTTTCTCCTGCAACGGCGGCGTGGCGAGTGGTACGACGAGGGGGAGAGAGAGTGTGTGTGTCTT

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.875497

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0296100.1	5	4310181	A	G

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0296100.1	osa-miR5827	Cleavage	4.5	11.123	1	21
Osa05LNT0296100.1	osa-miR3979-5p	Cleavage	5.0	12.739	1	20

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus