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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0296200.1

GGGCGTTTCGCTTTTTTGACAAGTACGTCGTCTAATACTGAAAGAAAAATTAACTGTAAATAGGAGAACATTGTTAAATTTAGGATTTGAAGCCAAATTTGTATTACTATTTGAATAATAGGTTCATGGTTAAGTAGTAACTAGTAAAGCATGGGCTAGCTCTTTTGTGATTTCTTTTTTGTGAGGGTTCACCTTTCTGGTTGATTGTCTCCCAACCCTCGGTAGTCTGACATTTTTATTTTCCAAATTTTGACATATCTCGGTCAAATTTACTGTTGCTAATTTGAGTTCTCGAAACATTTGAAATTTCACTCGCAATCTCCTTTTGCCCCCTGCCGAAACCTCGAAATTTCAGTCTTTGATCGGTTTCGTCGAGAACATTAACCCTGGTCTCATACTTCATGGTTTATTTGAATCCTTTTTTACAATCCTAAGTATTTATATGTTTTTCCTGTGTAGCAACAAACGCCTCTTTTGAAGTTTTCGTGTAGTTCTTTTTTCCGTACGAATTGAAAATCCATGTCATATTTTTCCGGTCGTCACATCTATTTTCGTCCCGCTTCGTCGCCCCTCCTCCCCCCAAAATCCCAATCGGAATCCAATCAAATCAAACCCCCGAAAAAAATCCCAATCGGAGTTCAATCACACAAATAAAATCGAAGAAAGCATCACATATATATCCAAATAAAAACCAAAAATTAGATCGAAGGAAGTCGCCGCCGCCCCATCATCTCCGAAGCACCGCCGTCGCCGTCGCCGCCGCAGGGACGGCTGGCAGCCGGCGGCTCCTCTCCTGCTGGATCCGGTGGACTCCCGCTAGATCCGCCGGCGGCGGCGATGGAGGGCGCTGGCGGAGGGGAGAGCGCCGCCGCCGCCGCCTCCCCTCCCGCTAGATCCTCCGCCGGCGCCGCCGACGCCGCCGTCGGTGGTAGGGGCCCCTCCCGCTAGAGCCGCCGCCGGTGGTGGGGGAGGGCGCCGCCGACGCCGCCGTCGGTGGTAGGGGCCCCTCCCGCTAGAGCCGCCGCCGGTGGTGGGGGAGGGCACCGCCGCCGCCGTCGGTGGTGGGGGAGGGCTCCGCCGCCGCCGCCGCCGCTGCTCGCAGGGCGCGTCCCCTCCCGCTAGATCCTCCGCCGGTGGTGGGGGAGGGCGCCGCCGACGCTGCCGTCGGTGGTAGGGGCCCCTCCCGCTAGAGCCGCCGCCGGTGGTGGGGGAGGGCACCGCCGCCGCCGTCGGTGGTGGGGGAGGGCTCCGCCGCCGCCGCCGCCGCCGCTCGCAGGGCGCGTCCCCTCCCGCTAGATCCGCCGCCGGCAGTGGGGGCCCCTCCCGCTAGAGCTGCCGCCGCCGCCGCTCGGGGGTGTTGAGGGGAGGGCGGCGAAGAGAGAGATGAGAGGAAAGGAAAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.906056
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0296200.1 osa-miR5535 Cleavage 4.5 8.707 1 22
Osa05LNT0296200.1 osa-miR5148a Cleavage 5.0 9.837 1 24
Osa05LNT0296200.1 osa-miR5148b Cleavage 5.0 9.837 1 24
Osa05LNT0296200.1 osa-miR5148c Cleavage 5.0 9.837 1 24
Osa05LNT0296200.1 osa-miR5490 Cleavage 4.5 10.58 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus
Osa05LNT0296200.1 5 4802345 Grain-Width(mm) 11.13835049 .
Osa05LNT0296200.1 5 4802372 Grain-Width(mm) 9.934319496 .
Osa05LNT0296200.1 5 4802378 Grain-Width(mm) 9.500826836 .