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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0026500.1

GACCAGATGAGATAAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCCTAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTATTGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCGTCCAGAGGTTCTCCTCAAGTAGTAAGTGTAGCTTGTAAATACAATGCCCCCAATAGCACCAAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATTTGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGGCATTTCATCTGCTGAACAGCTAGCATCATCTACAGGATAATGTTTGATTGTGGCATCAGATAAATTTCCATAACAAGCAACATCACGATACCGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTCCAGCAACCCAATGATAGATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGCACCACTCTTACAGTAACCCATTTTTCTATGCTTGATCAGAATGGTTGGGTCAGAGCAATCAGAGCAGCATACAAATTCTTTGCCAAAATCCAGCTTGTTCTTGCAATGCCCACATTTGTTTGTTAGCTTTGGGGTGCCTGTTATGCAGCAATGGAAATGTTTGTGGAATGGAAGACATGGCGGGCTTTTTGACTCCGTGCAAAGACCATCACAATCATCTGATTGAGAATCTAAGAAGTGGCCAGCAGAACACACTCTAGACCATTTGCTTTGGCACCCAGTCCAGTAGCACCCGTGGGACGGGACGTCGAGGCAGGCGGCGACGGCGAGGAAGGGGAGCGCCAGCGCGCACAGCCGCGGCAGCGCCGCCGCCATCTCCGGCGGCCGCCCCGCCGTCGAGGAGGATGGCCAAGCCACGGCCTCGTTTCGTTCCGGGGTGGCGCGAGAGGTGGCCGGTGGGGGTTGGTGACTCGGTGCGGTGGCGCGTGCCGGCCCGCGCCGCGGTGGGGAGGGGAAGGGTTAGCGAGTCGCTCGTTCGCTCGCTCGCCGTGCGCCCCCCGTGTCGGTGTCGGTGTCGGCGCCGGGCAGGCAGCTGTTTTCGGGGGGGGCTACGGGTGGGTTGGGCGGTCGCCGCGTCGCGCGGTGATC

Coding Potentia
Explanation CPC Score
noncoding -1.1317
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0026500.1 1 24171446 A G
Osa01LNT0026500.1 1 24169019 T C
Osa01LNT0026500.1 1 24169119 G A
Osa01LNT0026500.1 1 24169126 A T
Osa01LNT0026500.1 1 24169127 A T
Osa01LNT0026500.1 1 24169760 G A
Osa01LNT0026500.1 1 24170519 C T
Osa01LNT0026500.1 1 24171257 T C
Osa01LNT0026500.1 1 24171661 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0026500.1 osa-miR2094-3p Cleavage 3.5 16.226 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0026500.1 1 nan Morphological trait Panicle/flower CDO920 RZ776
Osa01LNT0026500.1 1 nan Resistance or Tolerance Drought tolerance BCD134 RZ776
Osa01LNT0026500.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0026500.1 1 qVB-1 Morphological trait Culm/leaf RZ776 RZ744
Osa01LNT0026500.1 1 qVB-1 Morphological trait Culm/leaf RZ776 RZ744
Osa01LNT0026500.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0026500.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0026500.1 1 nan Resistance or Tolerance Drought tolerance RM129 RM5
Osa01LNT0026500.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0026500.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0026500.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0026500.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus